Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l06
         (242 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14973-1|AAA85661.1|   56|Homo sapiens ribosomal protein S29 pro...    75   6e-14
L31610-1|AAB27426.1|   56|Homo sapiens protein ( Homo sapiens (c...    75   6e-14
BC035313-1|AAH35313.1|   56|Homo sapiens ribosomal protein S29 p...    75   6e-14
BC032813-1|AAH32813.1|   56|Homo sapiens ribosomal protein S29 p...    75   6e-14
AB061847-1|BAB79485.1|   56|Homo sapiens ribosomal protein S29 p...    75   6e-14
AB007165-1|BAA25827.1|   26|Homo sapiens ribosomal protein S29 p...    54   1e-07
BC047704-1|AAH47704.1|  183|Homo sapiens SPATA3 protein protein.       29   3.6  
AY032925-1|AAK54455.1|  183|Homo sapiens testis and spermatogene...    29   3.6  
AK093385-1|BAC04149.1|  192|Homo sapiens protein ( Homo sapiens ...    29   3.6  
AY273896-1|AAP33047.2|  724|Homo sapiens OATP-H protein.               27   8.4  

>U14973-1|AAA85661.1|   56|Homo sapiens ribosomal protein S29
           protein.
          Length = 56

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 33/55 (60%), Positives = 38/55 (69%)
 Frame = -3

Query: 165 MGHANIWYSHPXXXXXXXXXXXXXSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 1
           MGH  +++SHP             SNRHGLIRKYGLN+CRQCFR+YA DIGF KL
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 55


>L31610-1|AAB27426.1|   56|Homo sapiens protein ( Homo sapiens
           (clone cori-1cl5) S29 ribosomal protein mRNA, complete
           cds. ).
          Length = 56

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 33/55 (60%), Positives = 38/55 (69%)
 Frame = -3

Query: 165 MGHANIWYSHPXXXXXXXXXXXXXSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 1
           MGH  +++SHP             SNRHGLIRKYGLN+CRQCFR+YA DIGF KL
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 55


>BC035313-1|AAH35313.1|   56|Homo sapiens ribosomal protein S29
           protein.
          Length = 56

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 33/55 (60%), Positives = 38/55 (69%)
 Frame = -3

Query: 165 MGHANIWYSHPXXXXXXXXXXXXXSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 1
           MGH  +++SHP             SNRHGLIRKYGLN+CRQCFR+YA DIGF KL
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 55


>BC032813-1|AAH32813.1|   56|Homo sapiens ribosomal protein S29
           protein.
          Length = 56

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 33/55 (60%), Positives = 38/55 (69%)
 Frame = -3

Query: 165 MGHANIWYSHPXXXXXXXXXXXXXSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 1
           MGH  +++SHP             SNRHGLIRKYGLN+CRQCFR+YA DIGF KL
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 55


>AB061847-1|BAB79485.1|   56|Homo sapiens ribosomal protein S29
           protein.
          Length = 56

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 33/55 (60%), Positives = 38/55 (69%)
 Frame = -3

Query: 165 MGHANIWYSHPXXXXXXXXXXXXXSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 1
           MGH  +++SHP             SNRHGLIRKYGLN+CRQCFR+YA DIGF KL
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 55


>AB007165-1|BAA25827.1|   26|Homo sapiens ribosomal protein S29
          protein.
          Length = 26

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 22/26 (84%), Positives = 24/26 (92%)
 Frame = -3

Query: 81 GLIRKYGLNICRQCFREYAHDIGFKK 4
          GLIRKYGLN+CRQCFR+YA DIGF K
Sbjct: 1  GLIRKYGLNMCRQCFRQYAKDIGFIK 26


>BC047704-1|AAH47704.1|  183|Homo sapiens SPATA3 protein protein.
          Length = 183

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 54  CSNRTCGLSHACWSRIGM 107
           CS  TC  S ACW R+G+
Sbjct: 102 CSCATCPCSSACWRRLGL 119


>AY032925-1|AAK54455.1|  183|Homo sapiens testis and spermatogenesis
           cell apoptosis related protein 1 protein.
          Length = 183

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 54  CSNRTCGLSHACWSRIGM 107
           CS  TC  S ACW R+G+
Sbjct: 102 CSCATCPCSSACWRRLGL 119


>AK093385-1|BAC04149.1|  192|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36066 fis, clone TESTI2019257. ).
          Length = 192

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 54  CSNRTCGLSHACWSRIGM 107
           CS  TC  S ACW R+G+
Sbjct: 111 CSCATCPCSSACWRRLGL 128


>AY273896-1|AAP33047.2|  724|Homo sapiens OATP-H protein.
          Length = 724

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +3

Query: 30  TL*STVCICSNRTCGLSHACW--SRIGMTGILVRIC 131
           T+ ST  +     CG+  ACW    I M  +LV IC
Sbjct: 637 TIDSTCILWDINDCGIKGACWIYDNIKMAHMLVAIC 672


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,925,471
Number of Sequences: 237096
Number of extensions: 712357
Number of successful extensions: 1390
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 76,859,062
effective HSP length: 58
effective length of database: 63,107,494
effective search space used: 1388364868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)