Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l06
         (242 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...    71   8e-14
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    29   0.33 
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    28   0.77 
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical pr...    27   1.3  
U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily ass...    27   1.3  
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81510-3|CAB04163.1|  311|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AL032627-12|CAB63357.1|  577|Caenorhabditis elegans Hypothetical...    25   7.1  
AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    25   7.1  
Z74032-6|CAA98468.2|  234|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z49910-4|CAA90122.2|  173|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z35603-2|CAA84674.1|  418|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL117206-5|CAB60448.2|  345|Caenorhabditis elegans Hypothetical ...    25   9.4  
AL022716-3|CAA18771.1|  272|Caenorhabditis elegans Hypothetical ...    25   9.4  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 71.3 bits (167), Expect = 8e-14
 Identities = 30/55 (54%), Positives = 36/55 (65%)
 Frame = -3

Query: 165 MGHANIWYSHPXXXXXXXXXXXXXSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 1
           MG  N+W+SHP             +  HGLIRKYGL++CR+CFRE A DIGFKKL
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKL 55


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 118 RIPVIPILLQQAWLNPQVRFEHMQTVLQRVCS*H 17
           RIP  P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 106 IPILLQQAWLNPQVRFEHMQTVLQRV 29
           + +L  Q W +P++RF+H+   LQ +
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCLQNL 105


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 100 ILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQE 5
           I + + WL+P ++F+H+    Q +   H++ E
Sbjct: 103 IYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134


>Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical
           protein F16A11.1 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 81  HACWSRIGMTGILVRICEGENTKYLRG-PF*EIKL-FLANEQQIRYTFKMAN 230
           H  W    + G+L+ I EGE   YL G P  E +  FL+N Q     F  A+
Sbjct: 453 HENWQPGDVIGVLLNIPEGEVVFYLNGTPLKEPETEFLSNRQPSEGVFAAAS 504


>U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 293 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 160 AHFKKLNCFSLTSNKLDTPSRWRT 231
           A F +LNC ++T+N+   P+ WRT
Sbjct: 255 AQFPRLNCDTITNNQCKDPN-WRT 277


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 72  RKYGLNICRQCFREYAHDIGFK 7
           R YGL +C  C R +  + GF+
Sbjct: 234 RAYGLYVCTTCQRRFRDNKGFQ 255


>Z81510-3|CAB04163.1|  311|Caenorhabditis elegans Hypothetical
           protein F21D9.4 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 239 FVQVRHLEGVSNLLLVSEKQFNFLKWATQIFGILTLADTDKDP 111
           F Q+ HL G +N        + F   A   +  + + DT+K+P
Sbjct: 12  FDQLIHLAGATNGWAHQPYDYRFYSQAYDGYWFVAMVDTEKEP 54


>U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical
           protein K10D2.1b protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 154 KYLVFSPSQIRTRIPVIPILLQQAWLNPQVRFEH 53
           KYL+ +P+ +R+  P+I ++ +Q W + Q    H
Sbjct: 237 KYLM-TPAAVRSGKPLIKLIQRQTWKSDQFLAGH 269


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
           protein K10D2.1a protein.
          Length = 1223

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 154 KYLVFSPSQIRTRIPVIPILLQQAWLNPQVRFEH 53
           KYL+ +P+ +R+  P+I ++ +Q W + Q    H
Sbjct: 525 KYLM-TPAAVRSGKPLIKLIQRQTWKSDQFLAGH 557


>AL032627-12|CAB63357.1|  577|Caenorhabditis elegans Hypothetical
           protein Y41C4A.9 protein.
          Length = 577

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 208 LICCSLARNNLIS*N-GPRKYLVFSPSQIRTRIPVIPILLQQAWLNPQVRFEHMQT 44
           L+C  L    +++ + G   +L+ S +   T +    I+LQQ W N Q+ F H+ +
Sbjct: 282 LVCSPLGLRMILNGDDGNEAHLISSINM--TIVDRTDIMLQQNWENLQLIFSHLHS 335


>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 51  CRQCFREYAHDIGFKK 4
           C  CF+EYAH  G  +
Sbjct: 330 CAICFKEYAHQAGLSE 345


>Z74032-6|CAA98468.2|  234|Caenorhabditis elegans Hypothetical
           protein F35B12.8 protein.
          Length = 234

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 174 IKLFLANEQQIRYTFKMANLNE 239
           + +FL  E ++ Y+F + NLNE
Sbjct: 63  LTIFLEQEVEMAYSFGLENLNE 84


>Z49910-4|CAA90122.2|  173|Caenorhabditis elegans Hypothetical
           protein F44G4.6 protein.
          Length = 173

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 241 LSFKFAILKVYLICCSLARN 182
           +SF F  + V LICC   RN
Sbjct: 40  MSFAFIYILVSLICCVTTRN 59


>Z35603-2|CAA84674.1|  418|Caenorhabditis elegans Hypothetical
           protein T02C12.2 protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 87  RHGLIRKYGLNICRQCFREYAHDIGFK 7
           RH L+     + CR CF+E+ +  G K
Sbjct: 362 RHELLPNTYTHFCRTCFQEFNYVHGVK 388


>AL117206-5|CAB60448.2|  345|Caenorhabditis elegans Hypothetical
           protein Y67A10A.7 protein.
          Length = 345

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 130 QIRTRIPVIPILLQQAWLNPQVRFEHMQTVLQRVC 26
           QI   +PVIP  L + W+  +V    ++ ++   C
Sbjct: 188 QIPKFVPVIPHCLNRLWVRGEVNLNALRLLVNLSC 222


>AL022716-3|CAA18771.1|  272|Caenorhabditis elegans Hypothetical
           protein C24F3.2 protein.
          Length = 272

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 57  SNRTCGLSHACWSRIGMTGILVRICEGENTKYLR 158
           S  TC +SH C +++G        C G N K++R
Sbjct: 223 SGATCSVSHTCGAKLGTFIASGSKCNGCN-KFVR 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,626,861
Number of Sequences: 27780
Number of extensions: 102050
Number of successful extensions: 244
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)