Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16l04
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 40 5e-04
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 32 0.10
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 28 1.3
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 28 1.7
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 3.0
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 27 3.0
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 3.0
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 27 3.0
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 26 5.2
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 26 5.2
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 6.9
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 25 9.1
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 39.5 bits (88), Expect = 5e-04
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Frame = -3
Query: 452 RWDWHQTPEHVIVSVYAKKY--DPVLSYVKVNPIRLNIKLIFREQGDAAFELDLE-LRGV 282
R+DW QT + + +YAKK + V ++ N +++ IKL E G + F L L+ L
Sbjct: 185 RYDWSQTSFSLNIDIYAKKVKDEDVSLLMEKNTLKIEIKL---EDG-SIFSLVLDPLYEE 240
Query: 281 INIERSSASMLGTKVEIKL-KKGEPGSWSKL 192
I E+SS + +KVEI L KK W L
Sbjct: 241 IVPEKSSFKLFSSKVEITLIKKVSEIKWEAL 271
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.9 bits (69), Expect = 0.10
Identities = 30/108 (27%), Positives = 49/108 (45%)
Frame = +1
Query: 70 MLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSSLDHEPGSPFFNFISTLVP 249
+L+ + I ST ST SSSI+ SS + SS+ S F + I+T+
Sbjct: 511 LLSGSSAIPSTS-SSTPSSSII-------SSPMTSVLSSSSSIPTSSSSDFSSSITTISS 562
Query: 250 NIEAELLSILITPLSSRSNSKAASPCSLNINFMFSRIGFTFT*LKTGS 393
I + + + +SS +S +SP S +++ S TF+ T S
Sbjct: 563 GISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSS 610
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 61 Y*AMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFF 171
Y + L N ++S L+++ + + LTWT+D S FF
Sbjct: 173 YVLTIALINYLISKSLKNSIFNPL-LTWTLDISVVFF 208
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 219 LFQFYLHFSTQHRSRTSFDIDNPS 290
+F+ Y+ FS HRS +S D+ +PS
Sbjct: 37 IFRPYVIFSRSHRSLSSVDVSSPS 60
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 3.0
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Frame = +3
Query: 420 HVFWCLMPIPT-TLHCTSI*T--LFNPFMSSSSTAWLI*KGIEIC---GSFLAARPKF*- 578
++F L+P+ + T C SI L N +S S + + IC SF +A F
Sbjct: 231 YMFLELLPLQSITAACESILKDYLLNLVKTSESLSSQQMSCLRICCNSSSFWSAADSFKE 290
Query: 579 --TFMKNRAPRVICAQRLICLRTFKCCVTTTIFTTCSNSYISIFRDW 713
+F+KN V + + + + F TC N ++S+F +W
Sbjct: 291 VSSFLKNLLKNVTATPFEVSDMNW-AYIIASFFRTCLNDFVSVFPEW 336
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 178 VLGKSSLDHEPGSPFFNFISTLVPNIEAELLSI 276
V+GKS + H GSP FN V N +E L++
Sbjct: 468 VIGKSKVAHNTGSPVFNETFYSVLNSFSENLNL 500
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 185 PRTEPKKVEEKSTVQVNTMEDDSVDLSSVETITLNK 78
P E KKVEEK V+ D D+S+V LNK
Sbjct: 530 PLAESKKVEEKEPFYVS---KDKKDISAVNLADLNK 562
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -3
Query: 164 VEEKSTVQVNTMEDDSVDLSSVETITLNKVN 72
VE KSTVQ N DS LS +NK N
Sbjct: 107 VESKSTVQRNASGADSTSLSHFTANEINKGN 137
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 232 ISTLVPNIEAELLSILITPLSSRSNSKAASPCSLNINFM 348
ISTL E E+ + PL++ N +A+P S+++ ++
Sbjct: 83 ISTLQQVKEEEVSNTFSAPLNATGNFSSANPASIDLAYL 121
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 431 VSDANPNDTALYQHLNSL 484
VSDA PND+AL LN L
Sbjct: 249 VSDAQPNDSALRSVLNDL 266
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 175 SVLGKSSLDHEPGSPFFNFISTLVPNIEAELLSILITPLSSRSNSKAASPCSLN 336
S L K +L P +PFF+ + + + L++ +P+S +S +S S N
Sbjct: 356 STLEKRTLPSFPYNPFFSSSTAEIDPYHFQGLTLSTSPISGVESSSLSSAISRN 409
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 100 TELRSTESSSIVLTWTVDFSSTFFGSVLGKSSLDHEPGS 216
+ + S +S T S+T G+V+ KSS HEP S
Sbjct: 331 SNVSSITGTSTSTTTAATSSTTVTGTVIPKSSTVHEPPS 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,342,690
Number of Sequences: 5004
Number of extensions: 73842
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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