Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16l04
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0754 + 24933860-24934031,24936035-24936104,24936192-249363... 44 1e-04
03_03_0158 - 14951504-14951568,14952722-14952797,14952876-149529... 39 0.005
09_02_0325 + 7276650-7276770,7276979-7277055,7277146-7277188,727... 31 1.0
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 28 7.2
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919... 28 7.2
11_04_0176 - 14536305-14537315 28 9.5
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 28 9.5
06_03_0022 - 15536811-15536899,15537485-15537664,15537706-155379... 28 9.5
>01_05_0754 +
24933860-24934031,24936035-24936104,24936192-24936316,
24936539-24936677,24936926-24937022,24937105-24937170,
24937478-24937616,24938149-24938258,24938355-24938459,
24938579-24938686
Length = 376
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/100 (28%), Positives = 50/100 (50%)
Frame = -3
Query: 452 RWDWHQTPEHVIVSVYAKKYDPVLSYVKVNPIRLNIKLIFREQGDAAFELDLELRGVINI 273
R D++ + V+++++AK V L++ + G+ + L I
Sbjct: 169 RHDFYNSATEVVLTIFAKGVPAENVVVDFGEQMLSVSI--EVPGEEPYHFQPRLFSKIIP 226
Query: 272 ERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEK 153
E+S +L TKVEI+L K E +W+ LD+ + +PK V +K
Sbjct: 227 EKSRYQVLSTKVEIRLAKAEQITWTSLDYDK-KPKAVPQK 265
>03_03_0158 -
14951504-14951568,14952722-14952797,14952876-14952943,
14952997-14953156,14953239-14953425,14953982-14953986
Length = 186
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Frame = -3
Query: 407 YAKKYDPVLSYVKV---NPIRLNIK----LIFREQG---DAAFELDLELRGVINIERSSA 258
+A++ D V +++ ++LN+K IF +G D +ELDLEL +N+E S A
Sbjct: 9 WAQRSDKVFLTIELPDARDVKLNLKPEGQFIFSAKGPADDTPYELDLELFDAVNVEESKA 68
Query: 257 SMLGTKVEIKLKKGEPGSWSKL 192
++ + +KK E W +L
Sbjct: 69 AVAARSICYLIKKAESKWWPRL 90
>09_02_0325 +
7276650-7276770,7276979-7277055,7277146-7277188,
7277276-7277333,7277922-7277991,7278202-7278670,
7278895-7278959
Length = 300
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -3
Query: 746 KQSQPNTEQKTPVSEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYHPGCP 594
+++ P+T P SE + ++ NGG N A + PQ ++SL + P P
Sbjct: 174 ERTDPSTP--APTSESPTQGVPSNRDNGGQNEATKSPQRDDSLSRHEPLTP 222
>03_05_0725 +
27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -3
Query: 221 KGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLSSVETITLNKVNI 69
+GE G++ K V+ KS + N ME+D+ + E +T ++ ++
Sbjct: 802 EGEEGTFLKFTIKHLMALDVKLKSQLNPNGMEEDAAENDRAEDVTTDEASV 852
>03_02_0528 +
9189215-9189330,9190111-9190204,9190654-9190743,
9191601-9191717,9192187-9192259,9192335-9192453,
9192569-9192690,9192777-9192953,9193189-9193333,
9193458-9193636,9193742-9193991
Length = 493
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = -3
Query: 212 PGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLSSVE 96
P W +L+ K E ++ + +++ DD D++S+E
Sbjct: 443 PTPWGELEVYEYNGKYTEHRAAIDSSSVADDDTDVTSIE 481
>11_04_0176 - 14536305-14537315
Length = 336
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Frame = -3
Query: 449 WDWHQT-PEHVIVSVYAKKYDPVLSYVKVNPIRLNIKLIFREQGDAAFELDLELRGV--- 282
WD Q PE V+ +Y + ++ + +E+ D + +EL +
Sbjct: 194 WDESQARPEKVLFLMYEDLLQDTVGNLRTLAEFMGCGFSRQEEDDGIVQQIVELCSLNNL 253
Query: 281 --INIERSSASMLGTKVEIKLKKGEPGSWS 198
+N+ +S ++LG + +KG G WS
Sbjct: 254 KNLNVNKSGTTLLGISKDGFFRKGGTGDWS 283
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = -3
Query: 236 EIKLKKGEPGSWSKLDFPRT-EPKKVEEK---STVQVNTMEDDSVDLSSVE 96
E K+++ EP S+L PRT EP + ++ S + ED++V LSSV+
Sbjct: 228 EPKVEEREPSKASELKAPRTEEPSRSGDRIFSSPLARKLAEDNNVPLSSVK 278
>06_03_0022 -
15536811-15536899,15537485-15537664,15537706-15537982,
15538680-15538883,15539431-15539496,15539933-15539953,
15541622-15541731,15543244-15544236,15544928-15544955,
15545035-15545093,15545177-15545204,15545453-15545475,
15545784-15545853,15546980-15547033,15547127-15547169,
15548126-15548175
Length = 764
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -3
Query: 731 NTEQKTPVSEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYH 606
N Q + DG +G C+ GCN EG QT LC H
Sbjct: 104 NMIQLNMCASDGRSVVGQRCQRLGCNNVVEG-QT--LLCKSH 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,531,520
Number of Sequences: 37544
Number of extensions: 439211
Number of successful extensions: 1027
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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