Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16l04
(775 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD contain... 126 2e-29
AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein... 126 2e-29
U28735-1|AAG38886.2| 272|Caenorhabditis elegans Hypothetical pr... 34 0.098
Z83127-3|CAB05629.2| 291|Caenorhabditis elegans Hypothetical pr... 29 2.8
U40061-1|AAA81148.2| 573|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF492698-1|AAM49750.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
Z92796-2|CAB07231.1| 347|Caenorhabditis elegans Hypothetical pr... 29 4.9
AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical ... 29 4.9
Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p... 28 6.4
Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p... 28 6.4
AF025467-10|AAB71040.2| 154|Caenorhabditis elegans He1 homologu... 28 6.4
>AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD containing
protein protein.
Length = 321
Score = 126 bits (304), Expect = 2e-29
Identities = 67/187 (35%), Positives = 106/187 (56%), Gaps = 3/187 (1%)
Frame = -3
Query: 707 SEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCCQKRTTDFNTF 528
++ ++ IG C+N GC+T F+G + E+ C +HPG IFHEG+K+WSCC K+T++F F
Sbjct: 141 AQSADIQIGAPCRNNGCSTEFDGSKNKEN-CQHHPGAAIFHEGMKYWSCCNKKTSNFGAF 199
Query: 527 LNQPGCTTGAHKWVKESSNAGTVQCRWDWHQTPEHVIVSVYAKKYDPVLSYVKVN--PIR 354
L Q GCT+G HK+ +N + R DW + V ++VY + P + + + +R
Sbjct: 200 LEQVGCTSGEHKF---RNNEIVSKFREDWFSSNGFVTINVYCRGALPETANIVSDGHTVR 256
Query: 353 LNIKLIFREQGDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDF-PRT 177
+++K F G+A+ +LD +L + E S + KVEI LK+ W +L F P
Sbjct: 257 VSMKHGF---GNASVDLDYDLWDEVIPEESRVVIGERKVEISLKQKHGTGWPRLKFDPEL 313
Query: 176 EPKKVEE 156
+ K EE
Sbjct: 314 DAKNDEE 320
Score = 80.6 bits (190), Expect = 1e-15
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = -3
Query: 674 CKNGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCCQKRTTDFNTFLNQPGCTTGAH 495
C + GC F+ + + CTYHPG P FH+ K W+CC K++TDF T++N GCT G H
Sbjct: 9 CYHKGCGLLFDPKENDNEACTYHPGGPYFHDAYKIWTCCDKKSTDFGTWMNYKGCTRGKH 68
>AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein
protein 1 protein.
Length = 321
Score = 126 bits (304), Expect = 2e-29
Identities = 67/187 (35%), Positives = 106/187 (56%), Gaps = 3/187 (1%)
Frame = -3
Query: 707 SEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCCQKRTTDFNTF 528
++ ++ IG C+N GC+T F+G + E+ C +HPG IFHEG+K+WSCC K+T++F F
Sbjct: 141 AQSADIQIGAPCRNNGCSTEFDGSKNKEN-CQHHPGAAIFHEGMKYWSCCNKKTSNFGAF 199
Query: 527 LNQPGCTTGAHKWVKESSNAGTVQCRWDWHQTPEHVIVSVYAKKYDPVLSYVKVN--PIR 354
L Q GCT+G HK+ +N + R DW + V ++VY + P + + + +R
Sbjct: 200 LEQVGCTSGEHKF---RNNEIVSKFREDWFSSNGFVTINVYCRGALPETANIVSDGHTVR 256
Query: 353 LNIKLIFREQGDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDF-PRT 177
+++K F G+A+ +LD +L + E S + KVEI LK+ W +L F P
Sbjct: 257 VSMKHGF---GNASVDLDYDLWDEVIPEESRVVIGERKVEISLKQKHGTGWPRLKFDPEL 313
Query: 176 EPKKVEE 156
+ K EE
Sbjct: 314 DAKNDEE 320
Score = 80.6 bits (190), Expect = 1e-15
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = -3
Query: 674 CKNGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCCQKRTTDFNTFLNQPGCTTGAH 495
C + GC F+ + + CTYHPG P FH+ K W+CC K++TDF T++N GCT G H
Sbjct: 9 CYHKGCGLLFDPKENDNEACTYHPGGPYFHDAYKIWTCCDKKSTDFGTWMNYKGCTRGKH 68
>U28735-1|AAG38886.2| 272|Caenorhabditis elegans Hypothetical
protein F48E3.9 protein.
Length = 272
Score = 34.3 bits (75), Expect = 0.098
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = -3
Query: 308 ELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTV--QVN 135
+L LEL+ + E+SS+ + K+EI ++ E S LD ++E + + E+S V ++N
Sbjct: 175 DLVLELKAALQQEKSSSHGMLNKIEIMRQRCEDLEKSILDRDKSEDENIMERSRVEKELN 234
Query: 134 TMEDDSVDLSSVETI 90
+ S LSS I
Sbjct: 235 ALHALSKSLSSENKI 249
>Z83127-3|CAB05629.2| 291|Caenorhabditis elegans Hypothetical
protein T23F6.3 protein.
Length = 291
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 536 NTFLNQPGCTTGAHKWVKESSNAGTVQCRWDWHQTPE 426
N +N GC T +W + S+ CR W TP+
Sbjct: 224 NRCMNVIGCKTCVQRWHRSSTQPSCPLCRRRWIATPD 260
>U40061-1|AAA81148.2| 573|Caenorhabditis elegans Hypothetical
protein ZK563.2 protein.
Length = 573
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 624 LICLRTFKCCVTTTIFTTCSNSYISIFRDWSFLLCIWLRLFQ*FS-YVC 767
+I + CC + +C I +WSF L IW+R Q + ++C
Sbjct: 477 IILIIAITCCFICVLQNSCKEFLPKILHNWSF-LPIWMRSLQYYDPFMC 524
>AF492698-1|AAM49750.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = -3
Query: 761 IAESLKQSQPNTEQKTPVSEDGNVAIGTSCKNGGCNTAFEGPQ--TNESLCTYHPG---- 600
I + L++ PN +KTP + ++A+ +N N E P+ +N C + G
Sbjct: 8 IIDFLEKDAPNDIEKTPNYNEXSLAVK---RNKNFNPCLENPKICSNRGKCLHENGNFYC 64
Query: 599 -CPIFHEG 579
CP+ H G
Sbjct: 65 ICPVTHYG 72
>Z92796-2|CAB07231.1| 347|Caenorhabditis elegans Hypothetical
protein H25K10.3 protein.
Length = 347
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 627 ICLRTFKCCVTTTIFTTCS--NSYI-SIFRDWSFLLCIWLRL 743
+C FK CVTT I C+ N+Y+ ++F W + I++ L
Sbjct: 60 LCTPFFKLCVTTAIIDICTLLNNYLGAMFPKWGWGTGIYIFL 101
>AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical
protein Y71D11A.5 protein.
Length = 508
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 416 VSVYAKKYDPVLSYVKVNPIRLNIKL 339
+ +Y YDP L+Y +NP + N+ L
Sbjct: 112 IYIYETWYDPALNYAFMNPCKYNLSL 137
>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
protein C25G4.10 protein.
Length = 1208
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 488 VKESSNAGTVQCRWDWHQTPEHVIVSVYAKK-YDPVLSYVKVNPIRLNIKL 339
V+ ++ G V WD+ T ++ +VY +K +D + K+ I+ NI+L
Sbjct: 1003 VRIKASEGKVNIEWDYPLTKDYKYFAVYYRKAHDDHEDWHKLKTIQQNIEL 1053
>Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical
protein T04A11.3 protein.
Length = 1014
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 488 VKESSNAGTVQCRWDWHQTPEHVIVSVYAKK-YDPVLSYVKVNPIRLNIKL 339
V+ ++ G V WD+ T ++ +VY +K +D + K+ I+ NI+L
Sbjct: 809 VRIKASEGKVNIEWDYPLTKDYKYFAVYYRKAHDDHEDWHKLKTIQQNIEL 859
>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
protein C25G4.10 protein.
Length = 1208
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 488 VKESSNAGTVQCRWDWHQTPEHVIVSVYAKK-YDPVLSYVKVNPIRLNIKL 339
V+ ++ G V WD+ T ++ +VY +K +D + K+ I+ NI+L
Sbjct: 1003 VRIKASEGKVNIEWDYPLTKDYKYFAVYYRKAHDDHEDWHKLKTIQQNIEL 1053
>AF025467-10|AAB71040.2| 154|Caenorhabditis elegans He1 homologue
protein 1 protein.
Length = 154
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 713 PVSEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYHPGCPI 591
P + + K GG + + PQTN CTY CP+
Sbjct: 66 PSKDTDKLKTSVRAKVGG-SAMVDFPQTNSDACTYGVKCPV 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,304,834
Number of Sequences: 27780
Number of extensions: 410881
Number of successful extensions: 1095
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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