Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l04
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   7.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   7.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 533  Y*NLWFFFGSKTKILDLHEK 592
            Y  +W FFG + + LDL+ +
Sbjct: 999  YGKVWLFFGCRQRNLDLYRQ 1018


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 148 LSRSIRWKTIQSTSVQWKR 92
           +S S++W +  +  V W+R
Sbjct: 490 MSSSLQWSSTHTLDVAWRR 508


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 148 LSRSIRWKTIQSTSVQWKR 92
           +S S++W +  +  V W+R
Sbjct: 528 MSSSLQWSSTHTLDVAWRR 546


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +3

Query: 354 PYRVYLHIAQDWVIFLSINTNNHVFWCLMPI 446
           P    +HI + W+++   N + H    L+ I
Sbjct: 26  PAEELIHIPEHWLVYPEPNPSLHYLLALLYI 56


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 245 TKVEIKLKKGEPGSWSKLDF 186
           TK  ++ K+G+ G W + +F
Sbjct: 939 TKYILQYKEGDAGIWQQQEF 958


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 245 TKVEIKLKKGEPGSWSKLDF 186
           TK  ++ K+G+ G W + +F
Sbjct: 935 TKYILQYKEGDAGIWQQQEF 954


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,791
Number of Sequences: 438
Number of extensions: 4782
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)