Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16k16
(810 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 26 0.36
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 26 0.36
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 23 2.5
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 2.5
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 3.3
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 23 4.4
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 23 4.4
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 23 4.4
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 23 4.4
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 23 4.4
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 23 4.4
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 23 4.4
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 23 4.4
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 5.8
D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein. 22 7.7
AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly pro... 22 7.7
AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly pro... 22 7.7
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 26.2 bits (55), Expect = 0.36
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFND 275
I ++LS + Y+N+ +Y Y NN+N+
Sbjct: 81 IISSLSNNYKYSNYNNYNNNYNNNYNN 107
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 26.2 bits (55), Expect = 0.36
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFND 275
I ++LS + Y+N+ +Y Y NN+N+
Sbjct: 81 IISSLSNNYKYSNYNNYNNNYNNNYNN 107
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 23.4 bits (48), Expect = 2.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFND 275
I ++LS + Y+N+ +Y NN+N+
Sbjct: 314 IISSLSNNYKYSNYNNYNNYNNNNYNN 340
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 225 YNNHYSY*KLYQNNFND 275
YNN+Y+ Y NN+N+
Sbjct: 330 YNNNYNNYNNYNNNYNN 346
Score = 22.2 bits (45), Expect = 5.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 225 YNNHYSY*KLYQNNFNDL 278
YNN+ +Y Y NN+ L
Sbjct: 334 YNNYNNYNNNYNNNYKKL 351
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 3.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 624 SHENNPPSAFFCCKSKEP 677
SHENN P+ C K P
Sbjct: 870 SHENNQPTMNKCSDRKRP 887
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.6 bits (46), Expect = 4.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFN 272
I ++LS + ++NN+ +Y KL N N
Sbjct: 81 IISSLSNKTIHNNNNNYKKLQYYNIN 106
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.6 bits (46), Expect = 4.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFN 272
I ++LS + ++NN+ +Y KL N N
Sbjct: 81 IISSLSNKTIHNNNNNYKKLQYYNIN 106
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 22.6 bits (46), Expect = 4.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFN 272
I ++LS + ++NN+ +Y KL N N
Sbjct: 81 IISSLSNKTIHNNNNNYKKLQYYNIN 106
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.6 bits (46), Expect = 4.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFN 272
I ++LS + ++NN+ +Y KL N N
Sbjct: 81 IISSLSNKTIHNNNNNYKKLQYYNIN 106
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 204 NLSFRFLYNNHYSY*KLYQNNFN 272
N ++++ YNN Y+Y NN+N
Sbjct: 93 NNNYKYNYNNKYNY---NNNNYN 112
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 225 YNNHYSY*KLYQNNFN 272
YNN+Y+ KLY N N
Sbjct: 314 YNNNYNSKKLYYNIIN 329
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 225 YNNHYSY*KLYQNNFN 272
YNN+Y+ KLY N N
Sbjct: 325 YNNNYNSKKLYYNIIN 340
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 22.6 bits (46), Expect = 4.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFN 272
I ++LS + ++NN+ +Y KL N N
Sbjct: 314 IISSLSNKTIHNNNNNYKKLQYYNIN 339
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 22.2 bits (45), Expect = 5.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 204 NLSFRFLYNNHYSY*KLYQNNFND 275
N ++++ YNN+ Y NN+N+
Sbjct: 326 NNNYKYNYNNNNYNNNNYNNNYNN 349
>D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein.
Length = 432
Score = 21.8 bits (44), Expect = 7.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 804 SPXAXNYYHSAESGTALY*IAPKVHKVIVYFE*CIH 697
SP N Y+S + T+LY + + + Y + IH
Sbjct: 259 SPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIH 294
>AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 21.8 bits (44), Expect = 7.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 804 SPXAXNYYHSAESGTALY*IAPKVHKVIVYFE*CIH 697
SP N Y+S + T+LY + + + Y + IH
Sbjct: 259 SPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIH 294
>AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 21.8 bits (44), Expect = 7.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 804 SPXAXNYYHSAESGTALY*IAPKVHKVIVYFE*CIH 697
SP N Y+S + T+LY + + + Y + IH
Sbjct: 259 SPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIH 294
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,671
Number of Sequences: 438
Number of extensions: 5285
Number of successful extensions: 24
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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