Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16k15
         (871 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3343|AAS65196.1|  709|Drosophila melanogaster CG33337-P...    32   1.2  
AY060765-1|AAL28313.1|  108|Drosophila melanogaster GH22881p pro...    31   2.1  
AE014134-1175|AAN10602.2|  108|Drosophila melanogaster CG17377-P...    31   2.1  
AE014134-1174|AAN10601.1|  287|Drosophila melanogaster CG17377-P...    31   2.1  
AE014134-1173|AAF52442.3|  173|Drosophila melanogaster CG17377-P...    31   2.1  
AE014297-3342|AAF56149.2|  699|Drosophila melanogaster CG10182-P...    29   6.3  
AE014297-3345|AAF56151.2|  687|Drosophila melanogaster CG10183-P...    29   8.3  

>AE014297-3343|AAS65196.1|  709|Drosophila melanogaster CG33337-PA
           protein.
          Length = 709

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -3

Query: 185 CLNEFKYNYYELHLHILSTVVLFLLYK*YLRNAVGLGCIVVVL 57
           CL+   Y   ++ L ++S ++LF LYK   + A  +G ++V+L
Sbjct: 413 CLDHTWYLAVDMQLFLISPILLFALYKWGKKAAAAIGVLIVLL 455


>AY060765-1|AAL28313.1|  108|Drosophila melanogaster GH22881p
           protein.
          Length = 108

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 565 YDKCKKLLQN*I*LKCPYF*IYKKTPKCICYHSPTCVIYLFRMFYAHVILNV 410
           Y  C  + +N +  KCP     +  P C+C+  PTC    F + YA++++ V
Sbjct: 24  YTTCDCVKRNGLQDKCPRS-ACQGRPACLCFPFPTCGPAAFPLRYANMMMGV 74


>AE014134-1175|AAN10602.2|  108|Drosophila melanogaster CG17377-PB,
           isoform B protein.
          Length = 108

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 565 YDKCKKLLQN*I*LKCPYF*IYKKTPKCICYHSPTCVIYLFRMFYAHVILNV 410
           Y  C  + +N +  KCP     +  P C+C+  PTC    F + YA++++ V
Sbjct: 24  YTTCDCVKRNGLQDKCPRS-ACQGRPACLCFPFPTCGPAAFPLRYANMMMGV 74


>AE014134-1174|AAN10601.1|  287|Drosophila melanogaster CG17377-PC,
           isoform C protein.
          Length = 287

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 565 YDKCKKLLQN*I*LKCPYF*IYKKTPKCICYHSPTCVIYLFRMFYAHVILNV 410
           Y  C  + +N +  KCP     +  P C+C+  PTC    F + YA++++ V
Sbjct: 24  YTTCDCVKRNGLQDKCPRS-ACQGRPACLCFPFPTCGPAAFPLRYANMMMGV 74


>AE014134-1173|AAF52442.3|  173|Drosophila melanogaster CG17377-PA,
           isoform A protein.
          Length = 173

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 565 YDKCKKLLQN*I*LKCPYF*IYKKTPKCICYHSPTCVIYLFRMFYAHVILNV 410
           Y  C  + +N +  KCP     +  P C+C+  PTC    F + YA++++ V
Sbjct: 24  YTTCDCVKRNGLQDKCPRS-ACQGRPACLCFPFPTCGPAAFPLRYANMMMGV 74


>AE014297-3342|AAF56149.2|  699|Drosophila melanogaster CG10182-PA
           protein.
          Length = 699

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 185 CLNEFKYNYYELHLHILSTVVLFLLYK*YLRNAVGLGCIVVVL 57
           CL    Y   ++ L ILS ++L  LYK   + A G+  ++V+L
Sbjct: 414 CLGHTWYLSVDMQLFILSPIMLIALYKWGKKAAAGIFVLIVLL 456


>AE014297-3345|AAF56151.2|  687|Drosophila melanogaster CG10183-PA
           protein.
          Length = 687

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -3

Query: 185 CLNEFKYNYYELHLHILSTVVLFLLYK*YLRNAVGLGCIVVVL 57
           CL++  Y   ++ L+ILS ++LF LYK   + A  +  IVV+L
Sbjct: 407 CLDQSWYLAVDMQLYILSPLLLFGLYKWGKKAAWAIVGIVVLL 449


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,071,128
Number of Sequences: 53049
Number of extensions: 579858
Number of successful extensions: 769
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4209111660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)