Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16k15
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-11|CAB05757.2|  292|Caenorhabditis elegans Hypothetical p...    29   4.3  
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm rec...    28   7.5  
AF016447-2|AAG24012.1|  339|Caenorhabditis elegans Hypothetical ...    28   10.0 

>Z83233-11|CAB05757.2|  292|Caenorhabditis elegans Hypothetical
           protein K06B4.9 protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 196 KYSNV*TNLSTIIM-NYICIFYQLWCCFCYTNSICVMQ 86
           +Y  + +N +T+IM NY+ I   ++C  CY  S C ++
Sbjct: 110 RYEQLFSNPNTVIMRNYLWITCIIFCAVCYEFSKCFLK 147


>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
           protein T16G12.5 protein.
          Length = 1142

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 499 KKTPKCICYHSPTCVIYLFRMFYAHVILNVFVT 401
           K+ P   C +SP C + +  +F  H++L+  +T
Sbjct: 149 KQPPFQSCTNSPPCCLIILTIFLKHILLSTMLT 181


>AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 28 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 505 IYKKTPKCICYHSPTCVIYLFRMFYAHV-ILNVFVTHTRSHRPILASITYLTI 350
           IY+    CIC+H P+   Y+   F   +   +  + +  +  P+  S+  LT+
Sbjct: 250 IYQLAAPCICFHIPSFFFYIAPFFELEISFRSTIIIYGFNVYPLTDSLILLTV 302


>AF016447-2|AAG24012.1|  339|Caenorhabditis elegans Hypothetical
           protein C54F6.9 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 545 IAKLNLIEMSLFLDL*ENPEMHLLSLSYMCYLFIQNVLCS--RNFK 414
           +A  N+IE     D  EN E     L + C  F  NVLC   R FK
Sbjct: 150 LAVFNVIEYFSTFDFIENLEYSDKKLLFQCNTFNANVLCGAMRGFK 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,095,415
Number of Sequences: 27780
Number of extensions: 340507
Number of successful extensions: 669
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)