Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16k15
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   4.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   8.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   8.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 516 LISRSIRKPRNAFVITLLHVLFIYSEC 436
           L ++S+R P N FVI L    F+   C
Sbjct: 78  LSTKSLRTPSNLFVINLAISNFLMMFC 104


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 516 LISRSIRKPRNAFVITLLHVLFIYSEC 436
           L ++S+R P N FVI L    F+   C
Sbjct: 44  LSTKSLRTPSNLFVINLAISDFLMMFC 70


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 510 SRSIRKPRNAFVITL 466
           S+S+R P N F+++L
Sbjct: 85  SKSLRTPSNMFIVSL 99


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 510 SRSIRKPRNAFVITL 466
           S+S+R P N F+++L
Sbjct: 85  SKSLRTPSNMFIVSL 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,628
Number of Sequences: 438
Number of extensions: 4263
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)