Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16k11
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 308 2e-84
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 308 2e-84
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 308 2e-84
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 100 2e-21
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 48 6e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 48 1e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 48 1e-05
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 46 3e-05
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 46 3e-05
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 46 3e-05
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 36 0.045
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 36 0.045
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 33 0.32
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 30 2.2
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 5.2
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 29 5.2
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 6.8
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 6.8
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 6.8
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 308 bits (757), Expect = 2e-84
Identities = 142/182 (78%), Positives = 159/182 (87%)
Frame = -3
Query: 804 GTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 625
GTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK+
Sbjct: 226 GTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKD 285
Query: 624 LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKV 445
+RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKV
Sbjct: 286 IRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKV 345
Query: 444 DRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 265
DRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK
Sbjct: 346 DRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIK 405
Query: 264 AV 259
+V
Sbjct: 406 SV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 308 bits (757), Expect = 2e-84
Identities = 142/182 (78%), Positives = 159/182 (87%)
Frame = -3
Query: 804 GTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 625
GTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK+
Sbjct: 260 GTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKD 319
Query: 624 LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKV 445
+RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKV
Sbjct: 320 IRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKV 379
Query: 444 DRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 265
DRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK
Sbjct: 380 DRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIK 439
Query: 264 AV 259
+V
Sbjct: 440 SV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 308 bits (757), Expect = 2e-84
Identities = 142/182 (78%), Positives = 159/182 (87%)
Frame = -3
Query: 804 GTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 625
GTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK+
Sbjct: 260 GTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKD 319
Query: 624 LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKV 445
+RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKV
Sbjct: 320 IRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKV 379
Query: 444 DRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 265
DRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK
Sbjct: 380 DRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIK 439
Query: 264 AV 259
+V
Sbjct: 440 SV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 99.5 bits (237), Expect = 2e-21
Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 1/183 (0%)
Frame = -3
Query: 804 GTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 625
GTV +G++E+G ++ G +V P +V + + V GDN+ F +K + E
Sbjct: 352 GTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENE 411
Query: 624 LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKV 445
L+ G++ S ++ K F A+V+VL H I++GY+ VL +A + +
Sbjct: 412 LQGGFIIC-SPDSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATI 470
Query: 444 DRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VI 268
D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V+
Sbjct: 471 DKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVL 528
Query: 267 KAV 259
K V
Sbjct: 529 KVV 531
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 48.4 bits (110), Expect = 6e-06
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Frame = -3
Query: 804 GTVPVGRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQEAVPGDNVGFNVKNV 637
GT+ G + +G ++ I++ P + + +KS+ + G + F +K +
Sbjct: 387 GTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCGQSASFALKKI 446
Query: 636 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEI 457
K++R+G V D K P F A+++VL+HP I Y +L + +
Sbjct: 447 PKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAMLHIGSVRQTATLVSM 505
Query: 456 KEKVDRRTGKSTEVNPKSIK 397
++V RTG +V K I+
Sbjct: 506 GKEV-LRTGDRDKVQFKFIR 524
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 47.6 bits (108), Expect = 1e-05
Identities = 33/178 (18%), Positives = 76/178 (42%), Gaps = 1/178 (0%)
Frame = -3
Query: 789 GRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE-LRRG 613
G++E+G ++ V+ +++T +++ + GD + ++ E ++ G
Sbjct: 412 GKIESGEVEKDD-KVYIMSSVTAATVKECANNDGSRHCFAGDYILLTLQGTFEPESIQTG 470
Query: 612 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 433
V + + + F +++ I G L H+ + C F + +++
Sbjct: 471 SVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSN 530
Query: 432 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 259
G+ + P+ I G +A+V + + +E+F LGR R T+A G+++ V
Sbjct: 531 GEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 47.6 bits (108), Expect = 1e-05
Identities = 33/178 (18%), Positives = 76/178 (42%), Gaps = 1/178 (0%)
Frame = -3
Query: 789 GRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE-LRRG 613
G++E+G ++ V+ +++T +++ + GD + ++ E ++ G
Sbjct: 430 GKIESGEVEKDD-KVYIMSSVTAATVKECANNDGSRHCFAGDYILLTLQGTFEPESIQTG 488
Query: 612 YVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRT 433
V + + + F +++ I G L H+ + C F + +++
Sbjct: 489 SVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSN 548
Query: 432 GKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 259
G+ + P+ I G +A+V + + +E+F LGR R T+A G+++ V
Sbjct: 549 GEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 46.0 bits (104), Expect = 3e-05
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
Frame = -3
Query: 804 GTVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKN 640
GTV G++E G+LK G I + T VKSV E + + +A PGD +G ++
Sbjct: 266 GTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRG 325
Query: 639 VSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAE 460
+ K++RRG V + + K AQ+ VL TP+ + + H+
Sbjct: 326 LGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEHVF----- 377
Query: 459 IKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTV 283
+ +G S + K + G++A V L + + +E P RF +R +T+
Sbjct: 378 ---SLTWDSGASVRIIGKDFVMPGESAEVELSLNSQMFIE------PQQRFTIRKGAKTI 428
Query: 282 AVGVIKAV 259
GV V
Sbjct: 429 GTGVFTDV 436
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 46.0 bits (104), Expect = 3e-05
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
Frame = -3
Query: 804 GTVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKN 640
GTV G++E G+LK G I + T VKSV E + + +A PGD +G ++
Sbjct: 267 GTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRG 326
Query: 639 VSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAE 460
+ K++RRG V + + K AQ+ VL TP+ + + H+
Sbjct: 327 LGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEHVF----- 378
Query: 459 IKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTV 283
+ +G S + K + G++A V L + + +E P RF +R +T+
Sbjct: 379 ---SLTWDSGASVRIIGKDFVMPGESAEVELSLNSQMFIE------PQQRFTIRKGAKTI 429
Query: 282 AVGVIKAV 259
GV V
Sbjct: 430 GTGVFTDV 437
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 46.0 bits (104), Expect = 3e-05
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
Frame = -3
Query: 804 GTVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKN 640
GTV G++E G+LK G I + T VKSV E + + +A PGD +G ++
Sbjct: 267 GTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRG 326
Query: 639 VSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAE 460
+ K++RRG V + + K AQ+ VL TP+ + + H+
Sbjct: 327 LGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEHVF----- 378
Query: 459 IKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTV 283
+ +G S + K + G++A V L + + +E P RF +R +T+
Sbjct: 379 ---SLTWDSGASVRIIGKDFVMPGESAEVELSLNSQMFIE------PQQRFTIRKGAKTI 429
Query: 282 AVGVIKAV 259
GV V
Sbjct: 430 GTGVFTDV 437
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.045
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -3
Query: 804 GTVPVGRVETGVLKPGTIVVFA--PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSV 631
GTV VG +E GVLK G V + T +++ ++++E GD+ G + V
Sbjct: 254 GTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKG 313
Query: 630 KELRRGYVAG 601
++RG AG
Sbjct: 314 DTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.045
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -3
Query: 804 GTVPVGRVETGVLKPGTIVVFA--PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSV 631
GTV VG +E GVLK G V + T +++ ++++E GD+ G + V
Sbjct: 254 GTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKG 313
Query: 630 KELRRGYVAG 601
++RG AG
Sbjct: 314 DTVKRGMWAG 323
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 32.7 bits (71), Expect = 0.32
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Frame = -3
Query: 804 GTVPVGRVETGVLKPGTIVVFAPANITT----EVKSVEMHHEALQEAVPGDNVGFNVKNV 637
G V G + G L G V+ P T V S+ +A+ PG+ ++
Sbjct: 417 GQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPGEAASISLNLP 476
Query: 636 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 535
LRRG V + + PP +FTA +++L H
Sbjct: 477 DGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLCH 509
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 765 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 640
KPGTI F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 143 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 298
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 197 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 349
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -3
Query: 804 GTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 646
GTV G V GVL+ T + F N VK++E + + + G F V
Sbjct: 216 GTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -3
Query: 804 GTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 646
GTV G V GVL+ T + F N VK++E + + + G F V
Sbjct: 175 GTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 227
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = +2
Query: 551 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVM 730
T A +AAP GGLF + T P T F T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 731 LAGAKTTMVPGFNTPVSTLPT 793
+ T+ +P P PT
Sbjct: 528 TTTSTTSTLP---KPAEATPT 545
Score = 28.3 bits (60), Expect = 6.8
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Frame = +2
Query: 533 GWLSTMT*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASW---CI 703
G ST T A S AP GGLF + T P + T F T +P T
Sbjct: 446 GASSTTTPA--STAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAAT 503
Query: 704 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVP 805
+T + L +T+ + P +T T T+P
Sbjct: 504 TTTPATAATLGQTPSTVSATPSLPTTTSTTSTLP 537
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 501 LDCHTAHIACKFAEIKEKVDRRTGKSTE 418
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 501 LDCHTAHIACKFAEIKEKVDRRTGKSTE 418
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 501 LDCHTAHIACKFAEIKEKVDRRTGKSTE 418
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,893,391
Number of Sequences: 27780
Number of extensions: 414358
Number of successful extensions: 1259
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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