Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16k06
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 115 4e-26
07_03_0406 + 17785046-17785408,17786411-17786479,17786764-177868... 98 6e-21
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 87 1e-17
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 65 7e-11
12_02_0044 - 12807372-12807555,12807782-12807840,12807943-128080... 61 1e-09
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 34 0.15
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 31 1.1
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 31 1.1
12_02_0726 - 22552005-22552035,22552507-22552598,22552970-225530... 31 1.4
08_01_0661 - 5708088-5708131,5708217-5710048,5710527-5710625,571... 31 1.4
04_04_1339 + 32760424-32760584,32762428-32764462 30 2.5
03_06_0562 + 34732027-34733121 29 3.3
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398... 29 4.3
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 28 7.6
08_01_0086 - 629043-629594 28 10.0
02_02_0706 + 13126176-13126644,13128666-13128867,13129424-131295... 28 10.0
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 28 10.0
>01_04_0038 -
15339047-15339230,15339683-15339741,15340031-15340160,
15340248-15340498,15340632-15341225,15342050-15342511
Length = 559
Score = 115 bits (277), Expect = 4e-26
Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Frame = -2
Query: 523 RMTYIEAIEYLRANNIT-KEDGSFYEFGEDIPEMPERKMTDAI-GVPILLCKFPAEIKSF 350
R++Y +A+E L+ N+T K+ + E+G D+ ER +T+ I P+++ +P EIK+F
Sbjct: 402 RISYTKAVELLK--NVTDKKFENKVEWGIDLASEHERYLTEVIFKKPVIVYNYPKEIKAF 459
Query: 349 YMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRK 170
YM R DD++ ++DVL+P VGE+VGGS R + L + G+ PY WY D R+
Sbjct: 460 YM-RLNDDQKTVAAMDVLVPKVGELVGGSQREERLDLLKTRIQDAGLPLEPYEWYLDLRR 518
Query: 169 FGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRF 65
FGSV H G+GLG ER + + +IRDV +PR+
Sbjct: 519 FGSVKHSGFGLGFERMILFATGLENIRDVIPFPRY 553
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/51 (45%), Positives = 28/51 (54%)
Frame = -1
Query: 803 TQSFQLYLETCLATLGDVXCIXQSYRAEQSRTRRHLAEYSHVEAECPFHNV 651
T S QL +ET L V ++RAE S T RHLAE+ VE E F N+
Sbjct: 301 TVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFANL 351
>07_03_0406 +
17785046-17785408,17786411-17786479,17786764-17786868,
17787297-17787346,17787363-17787489,17788084-17788221,
17788863-17788940,17789141-17789218,17789318-17789386,
17789720-17789803,17789895-17789981,17790364-17790459,
17790541-17790615,17790762-17790888,17791027-17791142
Length = 553
Score = 98.3 bits (234), Expect = 6e-21
Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 2/153 (1%)
Frame = -2
Query: 520 MTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAI--GVPILLCKFPAEIKSFY 347
++Y +AIE L + K+ ++G D+ ER +T+ G P+++ +P EIK+FY
Sbjct: 397 LSYSDAIELLVGSK--KKFEFPVKWGLDLQSEHERYITEVAFGGRPVIIRDYPKEIKAFY 454
Query: 346 MSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKF 167
M R DD + ++D+L+P VGE++GGS R + L ++ Y+WY D R++
Sbjct: 455 M-RENDDGKTVAAMDLLVPRVGELIGGSQREERLDYLEARLDELNLNKDSYWWYLDLRRY 513
Query: 166 GSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPR 68
GSVPH G+GLG ER + + +IRD +PR
Sbjct: 514 GSVPHAGFGLGFERLVQFATGMDNIRDTIPFPR 546
Score = 35.9 bits (79), Expect = 0.038
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = -1
Query: 803 TQSFQLYLETCLATLGDVXCIXQSYRAEQSRTRRHLAEY 687
T S QL ET L DV ++RAE S T RHLAE+
Sbjct: 320 TVSGQLNGETYATALSDVYTFGPTFRAENSNTSRHLAEF 358
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 87.4 bits (207), Expect = 1e-17
Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 5/157 (3%)
Frame = -2
Query: 502 IEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPI-----LLCKFPAEIKSFYMSR 338
IEY + KE G E D+ E+K+ + + +LC++P+ ++ FY
Sbjct: 353 IEYDEGIRMLKEAGVHVEAMGDLNTESEKKLGELVHTKYDTDFYMLCRYPSAVRPFYTMP 412
Query: 337 CVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFGSV 158
C DD R + S DV + G EI+ G+ R+ E L + GID Y D ++G+
Sbjct: 413 CSDDPRYSNSFDVFVRGE-EIISGAQRVHVPEVLARQAEERGIDVGSIAAYVDAFRYGAP 471
Query: 157 PHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLERCTP 47
PHGG+G+GLER + +IR L+PR R P
Sbjct: 472 PHGGFGVGLERVVMLFCGLGNIRKASLFPRDPRRLNP 508
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 64.9 bits (151), Expect = 7e-11
Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Frame = -2
Query: 523 RMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKM----TDAIGVPI-LLCKFPAEI 359
++TY E I+ L KE G+ E D+ E+K+ + G +L ++P +
Sbjct: 393 KLTYEEGIQML------KEAGTEIEPMGDLNTEAEKKLGRLVKEKYGTEFFILYRYPLAV 446
Query: 358 KSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTD 179
+ FY C D+ + S DV + G EI+ G+ RI E L + GID S Y +
Sbjct: 447 RPFYTMPCYDNPAYSNSFDVFIRGE-EIISGAQRIHLPELLTKRATECGIDASTISSYIE 505
Query: 178 QRKFGSVPHGGYGLGLERFL 119
+G+ PHGG+G+GLER L
Sbjct: 506 SFSYGAPPHGGFGVGLERVL 525
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 800 QSFQLYLETCLAT-LGDVXCIXQSYRAEQSRTRRHLAEYSHVEAE 669
QS QLY + + V + +RAE S T RHL E+ ++AE
Sbjct: 296 QSPQLYKQMAICGGFERVFEVGPVFRAENSNTHRHLCEFVGLDAE 340
>12_02_0044 -
12807372-12807555,12807782-12807840,12807943-12808072,
12808160-12808224,12808318-12808506,12808574-12809119,
12809258-12809497,12809598-12810032
Length = 615
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/108 (25%), Positives = 55/108 (50%)
Frame = -2
Query: 391 PILLCKFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREG 212
P+++ +P ++K FY +R +D + + D+++P VG + G+ + + L + G
Sbjct: 502 PVIIYDYPKQLKPFY-ARLKEDLKTVSAFDLVVPKVGIVACGAQKEERMDNLTSRIEESG 560
Query: 211 IDPSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPR 68
+ WY D R+ G+V H G+ + LE + ++ +RD + R
Sbjct: 561 LQVEQLEWYLDTRRHGTVKHSGFSIDLESLILFVTGLKDVRDAIPFHR 608
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 33.9 bits (74), Expect = 0.15
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 166 GSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPR-FLERCT-P*APLPDDVSSL 14
G+ PHGG GL+R + L IRDV +P+ +C+ AP P D L
Sbjct: 639 GAPPHGGIAYGLDRLVMLLAGENSIRDVIAFPKTTTAQCSLTKAPSPVDPQQL 691
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +1
Query: 49 ACTALGSEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTCAG 180
AC+ LG G RP G A R P PAR R A S +G
Sbjct: 9 ACSGLGGPGGRLRPSPRPGAYADRLRPPLPARRWRVASSAAASG 52
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 172 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 71
++G P G GLG++R + L + IRDV +P
Sbjct: 621 EYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 654
>12_02_0726 -
22552005-22552035,22552507-22552598,22552970-22553094,
22553221-22553311,22553475-22553755,22554211-22554394,
22554499-22554583,22554692-22554782,22554909-22555293,
22555457-22555669,22555873-22556418,22556572-22556788,
22556907-22557058,22557519-22557663,22557846-22557907,
22559130-22559291,22559393-22559482,22560055-22560215,
22560907-22560997,22561125-22561308,22561556-22561737,
22561857-22562086,22562622-22562685
Length = 1287
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 97 GTGPGASRGSAPNPARSRREAPSRTCAGPYTSST 198
G G G S P+P +S +RT +GP TS T
Sbjct: 506 GDGSGLDANSKPSPNKSASNYMARTMSGPATSET 539
>08_01_0661 -
5708088-5708131,5708217-5710048,5710527-5710625,
5711015-5711508,5711579-5711632,5712597-5712683,
5712684-5712776
Length = 900
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 4 SGKIKTIRRRVEALRACTALGSEGRDTRPGCGTGPGASRGSA 129
S +++ I + + L A A G+ G + PG G G G S GS+
Sbjct: 176 SERLEPISQEIVLLEASDASGAAGGPSVPGTGNGHGQSSGSS 217
>04_04_1339 + 32760424-32760584,32762428-32764462
Length = 731
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 378 HSSIGTPMASVIFRSGISGMSSPNS*KDPSSFVMLL 485
HS+I + MAS + SG + +S P KDP FV L
Sbjct: 301 HSTIRSVMASHVKESGKALVSDPEKIKDPVEFVQRL 336
>03_06_0562 + 34732027-34733121
Length = 364
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 106 PGASRGSAPNPARSRREAPSRTCAGPYTSSTG 201
P SR AP+P S +PSR P +S++G
Sbjct: 160 PRTSRYGAPSPPSSAASSPSRAAPPPVSSTSG 191
>03_02_0875 +
12038365-12039329,12039417-12039593,12039651-12039893,
12040045-12040124,12040242-12040508,12040599-12040710,
12040757-12041071,12041357-12041366
Length = 722
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 49 ACTALGSEGR-DTRPGCGTGPGASRGSAPNPAR-SRREAPS-RTCAGPYTSST 198
A TA+GSEG T C G G++ GSA NP R + PS RTC P +T
Sbjct: 672 AATAIGSEGDFTTGSSCNIG-GSAVGSA-NPLRPPTLDIPSPRTCFFPMPRNT 722
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 172 KFGSVPHGGYGLGLERFLCWLLDRYHIR 89
++G P GG+GLG++R L D +I+
Sbjct: 563 EYGLPPTGGWGLGIDRLTMLLTDSQNIK 590
>08_01_0086 - 629043-629594
Length = 183
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -1
Query: 446 WRGHPGNARAEDDGRHW-RADTAVQVPGR 363
WRG R E GR W RA+ +V GR
Sbjct: 140 WRGGAEERRGEGAGRRWRRAEEGARVAGR 168
>02_02_0706 +
13126176-13126644,13128666-13128867,13129424-13129501,
13131295-13131466
Length = 306
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 103 GPGASRGSAPNPARSRREAPSRTCAGPYTSSTG*GRCLRACNLP 234
G S GS P PA++R A S G + G C+R NLP
Sbjct: 130 GRRRSSGSGPTPAKNRAAANSAKGTGEDLNDGG--VCVRVWNLP 171
>01_06_1061 -
34169469-34169624,34170837-34170938,34171029-34171180,
34172087-34172153,34172239-34172419,34172655-34172778,
34174775-34174871,34175929-34176331,34176729-34176888,
34177412-34177486,34177714-34177892,34178224-34178303,
34178561-34179322
Length = 845
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 115 SRGSAPNPARSRREAPSRTCAGPYT 189
S G+ P PAR R A S CA P++
Sbjct: 176 SSGALPRPARRRSLADSLACAWPFS 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,452,814
Number of Sequences: 37544
Number of extensions: 433935
Number of successful extensions: 1688
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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