Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16k06
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical p... 241 4e-64
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 80 2e-15
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 74 1e-13
Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical pr... 40 0.003
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 34 0.10
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 34 0.10
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 34 0.10
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical... 31 0.73
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical... 31 0.73
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.97
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.97
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.97
Z81454-7|CAB76407.1| 378|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC084159-12|ABO16466.1| 377|Caenorhabditis elegans F-box a prot... 30 1.7
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 30 2.2
AC087735-1|AAK31560.2| 98|Caenorhabditis elegans Hypothetical ... 30 2.2
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL132862-18|CAB70230.2| 481|Caenorhabditis elegans Hypothetical... 28 6.8
Z68882-16|CAE17745.1| 118|Caenorhabditis elegans Hypothetical p... 28 9.0
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 28 9.0
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 9.0
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 28 9.0
>Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical
protein F22D6.3a protein.
Length = 545
Score = 241 bits (590), Expect = 4e-64
Identities = 105/159 (66%), Positives = 125/159 (78%)
Frame = -2
Query: 523 RMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYM 344
RM Y EAIE+L+ N++ E G + +GEDI E ER+MTD IGVPILL +FP IK+FYM
Sbjct: 387 RMPYKEAIEWLQKNDVRNEMGEKFVYGEDIAEAAERRMTDTIGVPILLNRFPHGIKAFYM 446
Query: 343 SRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFG 164
RC DD LTESVD+LMPGVGEIVGGSMRIW ++L+ +++ G+D YYWY DQRK+G
Sbjct: 447 PRCADDNELTESVDLLMPGVGEIVGGSMRIWKEDQLLAAFEKGGLDSKNYYWYMDQRKYG 506
Query: 163 SVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLERCTP 47
SVPHGGYGLGLERF+CWL D HIRDVCLYPRF+ RC P
Sbjct: 507 SVPHGGYGLGLERFICWLTDTNHIRDVCLYPRFVGRCAP 545
Score = 85.8 bits (203), Expect = 3e-17
Identities = 39/48 (81%), Positives = 41/48 (85%)
Frame = -1
Query: 803 TQSFQLYLETCLATLGDVXCIXQSYRAEQSRTRRHLAEYSHVEAECPF 660
TQS QLYLETC A LGDV CI QSYRAE+SRTRRHL+EY HVEAEC F
Sbjct: 293 TQSSQLYLETCNAALGDVYCISQSYRAEKSRTRRHLSEYQHVEAECAF 340
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical
protein B0464.1 protein.
Length = 531
Score = 79.8 bits (188), Expect = 2e-15
Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
Frame = -2
Query: 520 MTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPI-LLCKFPAEIKSFYM 344
+ Y +AI LR N I E G + + + + + + +L KFP ++ FY
Sbjct: 376 LKYPDAITLLRENGI--EIGDEDDLSTPVEKFLGKLVKEKYSTDFYVLDKFPLSVRPFYT 433
Query: 343 SRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFG 164
D R + S D+ M G EI+ G+ RI D + L+E K +D + Y D K+G
Sbjct: 434 MPDAHDERYSNSYDMFMRGE-EILSGAQRIHDADMLVERAKHHQVDLAKIQSYIDSFKYG 492
Query: 163 SVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLERCTP 47
PH G G+GLER L ++IR L+PR +R TP
Sbjct: 493 CPPHAGGGIGLERVTMLFLGLHNIRLASLFPRDPKRLTP 531
Score = 32.3 bits (70), Expect = 0.42
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 800 QSFQLYLETCLA-TLGDVXCIXQSYRAEQSRTRRHLAEYSHVEAECPFH 657
QS QLY + +A V I +RAE S T RH+ E+ ++ E F+
Sbjct: 278 QSPQLYKQMAIAGDFEKVYTIGPVFRAEDSNTHRHMTEFVGLDLEMAFN 326
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 73.7 bits (173), Expect = 1e-13
Identities = 41/95 (43%), Positives = 57/95 (60%)
Frame = -2
Query: 391 PILLCKFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREG 212
PI + +P K FYM+R D +LT S D+L+PG+GE+ GGS+R EEL + G
Sbjct: 314 PIFVTHYPVGQKPFYMAR---DGQLTLSFDLLVPGIGELAGGSLREQSAEELQR--RGCG 368
Query: 211 IDPSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLL 107
ID WY + R+ G P GG+G+G ER L +L+
Sbjct: 369 ID-----WYLEMRRRGQPPTGGFGIGFERMLQYLI 398
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -1
Query: 797 SFQLYLETCLATLGDVXCIXQSYRAEQSRTRRHLAEYSHVEAECPF 660
S QL+LE ++ L V + S+RAE+ ++ HL+E+ +EAE F
Sbjct: 183 SSQLHLEAMVSRLQRVYILGPSFRAERQQSHAHLSEFHMLEAEVAF 228
>Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical
protein F10C2.6 protein.
Length = 593
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = -2
Query: 304 DVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFGSVPHGGYGLGLER 125
D+++ GV E+ GGS+RI + E K G + G+ PHGG+ LGL+R
Sbjct: 479 DLVINGV-EMGGGSIRIENSEIQRHVLKVLGEPTDEMEHLLNALSHGAPPHGGFALGLDR 537
Query: 124 FLCWLLDRYH----IRDVCLYPR 68
F+ L + +RDV +P+
Sbjct: 538 FVAMLTSDGNPLTPVRDVIAFPK 560
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -2
Query: 172 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 71
++G P GG+G+G++R L D +I++V L+P
Sbjct: 460 EYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 493
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -2
Query: 172 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 71
++G P GG+G+G++R L D +I++V L+P
Sbjct: 542 EYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 575
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -2
Query: 172 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 71
++G P GG+G+G++R L D +I++V L+P
Sbjct: 518 EYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 551
>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
protein Y105C5B.21b protein.
Length = 1084
Score = 31.5 bits (68), Expect = 0.73
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 256 IWDHEELMEGYKREGIDPSPYYWYTDQR 173
+W H+EL +G+KR G+ + +Y T +R
Sbjct: 966 MWQHKELHDGFKRSGLKEADFYSGTARR 993
>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
protein Y105C5B.21a protein.
Length = 1254
Score = 31.5 bits (68), Expect = 0.73
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 256 IWDHEELMEGYKREGIDPSPYYWYTDQR 173
+W H+EL +G+KR G+ + +Y T +R
Sbjct: 1136 MWQHKELHDGFKRSGLKEADFYSGTARR 1163
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 97 GTGPGASRGSAPNPARSRREAPSRT--CAGPYTSSTG*GR 210
G+ P A GS P P R +R+AP R+ P T S GR
Sbjct: 319 GSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGR 358
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 97 GTGPGASRGSAPNPARSRREAPSRT--CAGPYTSSTG*GR 210
G+ P A GS P P R +R+AP R+ P T S GR
Sbjct: 340 GSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGR 379
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 97 GTGPGASRGSAPNPARSRREAPSRT--CAGPYTSSTG*GR 210
G+ P A GS P P R +R+AP R+ P T S GR
Sbjct: 325 GSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGR 364
>Z81454-7|CAB76407.1| 378|Caenorhabditis elegans Hypothetical
protein B0391.11 protein.
Length = 378
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +2
Query: 449 LVEGSVFLRNVVGAEILYRFYIRHTFERFLWFFKVRV-EFV-YELSFGRGQDPVHDI-HD 619
++E +F+R+ + E+L+R IR +++ F V +++ +E F R + HD+ +D
Sbjct: 5 VLENPIFIRSCILYEVLHRKPIRESYKNFCEKLGDDVMDYIDFEFWFYRFYEGNHDLNYD 64
Query: 620 QILEP 634
Q LEP
Sbjct: 65 QKLEP 69
>AC084159-12|ABO16466.1| 377|Caenorhabditis elegans F-box a protein
protein 222 protein.
Length = 377
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +2
Query: 449 LVEGSVFLRNVVGAEILYRFYIRHTFERFLWFFKVRV-EFV-YELSFGRGQDPVHDI-HD 619
++E +F+R+ + E+L+R IR +++ F V +++ +E F R + HD+ +D
Sbjct: 5 VLENPIFIRSCILNEVLHRKPIRESYKNFCEKLGDDVMDYIDFEFWFYRFYEGNHDLNYD 64
Query: 620 QILEP 634
Q LEP
Sbjct: 65 QKLEP 69
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 64 GSEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTC-AGP 183
G G+ +PG PGA+ A P ++ P + C AGP
Sbjct: 119 GKPGKPGKPGAPGAPGAAGKGASAPCEAKTPPPCQPCPAGP 159
>AC087735-1|AAK31560.2| 98|Caenorhabditis elegans Hypothetical
protein Y35H6.3 protein.
Length = 98
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 65 EARVETHVPDVVPVQEPAEEALQTQPVAAVRHRA 166
E+ VE H+P +QE EE T+P R RA
Sbjct: 33 ESSVEDHIPSCSEMQEEIEELNSTKPTPKSRKRA 66
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 64 GSEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTC-AGP 183
G G+ +PG PGA A P ++ P + C AGP
Sbjct: 118 GKPGKPGKPGAPGNPGAPGKGAAVPCEAKTPPPCKPCPAGP 158
>AL132862-18|CAB70230.2| 481|Caenorhabditis elegans Hypothetical
protein Y73F8A.24 protein.
Length = 481
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -1
Query: 773 CLATLGDVXCIX-----QSYRAEQSRTRRHLAE---YSHVEAECPFHNV 651
C+AT G V C+ Q E R R +L + YSH E+E FH V
Sbjct: 379 CIATSGPVNCLPITVADQIRLWEDERRRMNLKDAYIYSHFESEDEFHGV 427
>Z68882-16|CAE17745.1| 118|Caenorhabditis elegans Hypothetical
protein C47E12.13 protein.
Length = 118
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 425 HFRDVLSKLVEGSVFLRNVVGAEILYRFY 511
+FR+V++ EGS F R V G E +YRF+
Sbjct: 66 NFRNVIN---EGSKFFRKVFGHENVYRFH 91
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 64 GSEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTC-AGP 183
G G +PG PGAS A P P + C AGP
Sbjct: 129 GKPGTPGKPGAPGNPGASGKGAAAPCEPSTPPPCQPCPAGP 169
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 64 GSEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTC-AGP 183
G G D PG PG++ G+ N A +TC AGP
Sbjct: 149 GQAGLDGLPGAPGQPGSNGGAGSNGASEGSAGGCKTCPAGP 189
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Frame = +1
Query: 64 GSEGRDTRPGCGTGPG-----ASRGSAPNPARSRREAPSRTCAGPYT 189
G +G D +PG G PG +RG A NP + P P T
Sbjct: 224 GGKGHDGKPGLGGQPGVRGAVGARGDAGNPGLPGPQGPKGEPGNPGT 270
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,269,628
Number of Sequences: 27780
Number of extensions: 331032
Number of successful extensions: 1186
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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