Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16k05
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    29   4.5  
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341...    29   4.5  
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759     28   7.9  

>08_02_1277 +
           25823835-25825113,25825201-25825418,25825501-25825724,
           25826468-25827080,25827735-25827775,25830549-25831191,
           25832595-25834012,25834110-25834251,25834415-25834522,
           25835346-25835558,25835643-25835753,25836099-25836293,
           25836555-25836695,25836835-25836909
          Length = 1806

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +2

Query: 80  GICDLPFKDGIFILIHLEANRS--CTLKPLSAIILSPESQICSSLLRSTICRSLAEPA*T 253
           GICD   +    I + LEA+R+   T   LSA +L+P + + S+  RS+  R L  P  +
Sbjct: 400 GICDAAKE----ISVMLEASRAQYSTSNDLSAKMLNPVALLRSASSRSSSSRFLLAPTSS 455

Query: 254 FE-TYDN 271
            E  YDN
Sbjct: 456 IEDLYDN 462


>05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,
            3413770-3413881,3414309-3414489,3414714-3414896,
            3415133-3415315,3416062-3416131,3416413-3416522,
            3416604-3416908,3417079-3417175,3417622-3417765,
            3418217-3418303,3418387-3418473,3418566-3418706,
            3418805-3418930,3419166-3419264,3419690-3419757,
            3420275-3420341,3420713-3420883,3420959-3421048,
            3421831-3421911,3423397-3423470,3423784-3423855,
            3423925-3424017,3424138-3424204
          Length = 1030

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 336  SFSSYKHKNTLKFLVGASPGGLLSY 262
            SFSS+  K  LKF+ G S G LL +
Sbjct: 943  SFSSHNQKKFLKFVTGCSRGPLLGF 967


>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
          Length = 428

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 1/159 (0%)
 Frame = -1

Query: 654 YRWSRVVGISIEDQFLMLLIKLRRNTIDFELSKIFGVSKTEVSNFVVTWINFVSDI*NLI 475
           +R+     + +EDQ  + L++L        +   FG++ + +SN    +I  + +     
Sbjct: 118 FRFGDKAILGVEDQVGVALLRLTTGESLLSIGNRFGMNHSAISNITWKFIEALEERAANH 177

Query: 474 DIWPSRSLVNYYMPNCFKTH-YPYTRVIIDGTEIGIQKPSQPDAQKASFSSYKHKNTLKF 298
             WP+   +        K    P     ID T I +   +QP++        ++   L+ 
Sbjct: 178 LKWPTPEEMATVKSKFEKIQGLPNCCGAIDTTHILMCSSAQPNSNVWLDGENRNSMVLQA 237

Query: 297 LVGASPGGLLSYVSNVYAGSASDRQIVERSKLLQICDSG 181
           +V A        V + + GS +D  I+  S   ++C+ G
Sbjct: 238 IVDADM--RFRDVVSGWPGSLNDSCILRTSGFYRLCEKG 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,437,166
Number of Sequences: 37544
Number of extensions: 332900
Number of successful extensions: 637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)