Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16k05
         (828 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121689-1|AAM52016.1|  518|Drosophila melanogaster RE49550p pro...    35   0.12 
AE013599-2450|AAF57878.2|  518|Drosophila melanogaster CG6568-PA...    35   0.12 
AY118877-1|AAM50737.1|   85|Drosophila melanogaster GM31840p pro...    32   1.1  

>AY121689-1|AAM52016.1|  518|Drosophila melanogaster RE49550p
           protein.
          Length = 518

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -1

Query: 303 KFLVGASPGGLLSYVSNVYAGSASDRQIVERSKLLQICDSGDSIMADRG 157
           KF++  +  G++SYVS+ + GS  D Q+ E S+   +  +  ++ A+ G
Sbjct: 343 KFILCINTNGIISYVSSAFPGSCDDLQLFEASRFRDVIPNYLTLCAEPG 391


>AE013599-2450|AAF57878.2|  518|Drosophila melanogaster CG6568-PA
           protein.
          Length = 518

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -1

Query: 303 KFLVGASPGGLLSYVSNVYAGSASDRQIVERSKLLQICDSGDSIMADRG 157
           KF++  +  G++SYVS+ + GS  D Q+ E S+   +  +  ++ A+ G
Sbjct: 343 KFILCINTNGIISYVSSAFPGSCDDLQLFEASRFRDVIPNYLTLCAEPG 391


>AY118877-1|AAM50737.1|   85|Drosophila melanogaster GM31840p
           protein.
          Length = 85

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -1

Query: 480 LIDIWPSRSLVNYYMPNCFKTHYPYTRVIIDGTEIGIQKPSQPD 349
           L D+W  +S V  Y P C K  +P +   +DG   G   PS PD
Sbjct: 28  LSDVW-GKSTVKIYCPRCKKNFHPKSDTQLDGAMFG---PSFPD 67


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,781,428
Number of Sequences: 53049
Number of extensions: 602431
Number of successful extensions: 1318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3921660132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)