Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16k05
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81554-4|CAB04511.1|  231|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>Z81554-4|CAB04511.1|  231|Caenorhabditis elegans Hypothetical
           protein F57G4.9 protein.
          Length = 231

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = -1

Query: 393 IDGTEIGIQKPSQPDAQKASFSSYKHKNTLKFLVGASPGGLLSYVSNVYAGSASDRQIVE 214
           +DG  I I+ P    +    F +YKH  +   LV     G + +V     GS +D  I  
Sbjct: 32  LDGKHIRIKAPPHSGSL---FFNYKHFFSFVLLVVVDADGRVIWVDVGSPGSNNDASIFS 88

Query: 213 RSKLLQICD 187
            SKL  I D
Sbjct: 89  DSKLKTILD 97


>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
           protein ZK455.2 protein.
          Length = 1118

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -1

Query: 651 RWSRVVGISIEDQFLMLLIKLRRNTIDFELSKIFGVSKTEVSNFVVTWI 505
           R+ +V  I+     L LL +L+    D  L+K +G+S  + + F+V W+
Sbjct: 583 RYQQVRNITFPKSELRLLKELKICEND-NLNKFYGISFNQQNEFIVMWV 630


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,853,375
Number of Sequences: 27780
Number of extensions: 329303
Number of successful extensions: 638
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)