Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16k03
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    35   0.004
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    35   0.005
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   5.1  
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    24   9.0  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -2

Query: 271 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVG 167
           K +T + +  RP+R KG  +K + FVR +VREV G
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAG 47


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 34.7 bits (76), Expect = 0.005
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -2

Query: 271 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVG 167
           K +T + +  RP+R KG  +K + FVR +VREV G
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAG 47


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 263 DTLAASGYFSCFVAFSQAYCDFKTRSHDFG 352
           D   A  + S F AFSQ Y  +  +S+DFG
Sbjct: 319 DLRLACCFESHFFAFSQHYPRYLEQSNDFG 348


>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 254 FVCDTLAASGYFSCFVAFSQAYCDFKTRSH 343
           F+ +T+      +  V   QAYCD++ R +
Sbjct: 211 FIAETVEPGSCSTDLVKRVQAYCDYEARQY 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,214,847
Number of Sequences: 5004
Number of extensions: 17405
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)