Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16k03
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...    38   0.003
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     37   0.006
07_03_0078 - 13147741-13148913                                         30   0.52 
12_02_1029 - 25521641-25521852,25521978-25522035,25522142-255221...    28   2.1  
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773...    27   6.3  

>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 23/57 (40%), Positives = 30/57 (52%)
 Frame = -2

Query: 337 PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVG 167
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR L+REVVG
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVG 52


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = -2

Query: 337 PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVG 167
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR+L+REV G
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAG 52


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 234 AGLILMALSVIPLRPADILVVLWPF 308
           AGL+  AL VIP  P  + +V WPF
Sbjct: 71  AGLLYFALVVIPALPGVLRLVAWPF 95


>12_02_1029 -
           25521641-25521852,25521978-25522035,25522142-25522191,
           25522280-25522585,25522666-25523068,25524573-25524624,
           25525523-25525572,25526151-25526306,25526987-25527286
          Length = 528

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = -2

Query: 370 FLRICQSEIMAPRFEIAVGLRKG--H-KTTKISAGRKGITDKAIRIRPARLKGLQTKHSK 200
           FL IC  E++A   E+    RKG  H K   +   R G+    ++++   + G  TK  K
Sbjct: 401 FLTICSQELLARGTELLKRTRKGALHWKVVSVYIHRTGVV--MLKMKSRHVAGTLTKKKK 458

Query: 199 -FVRDLVREV 173
             V D+ R+V
Sbjct: 459 NVVVDVCRDV 468


>03_05_0422 -
           24076917-24077125,24077209-24077266,24077350-24077399,
           24077494-24077754,24077837-24078230,24081256-24081366,
           24082255-24082596
          Length = 474

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = -2

Query: 370 FLRICQSEIMAPRFEIAVGLRKG--H-KTTKISAGRKGITDKAIRIRPARLKGLQTKHSK 200
           FL IC  E++A   E+    RKG  H K   +   R G+    ++++   + G  TK  K
Sbjct: 348 FLGICSQELLARGTELLKRTRKGALHWKVVSVYINRMGLV--MLKMKSRHVAGTITKKKK 405

Query: 199 -FVRDLVREV 173
             V D+ ++V
Sbjct: 406 SVVIDVCKDV 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,660,982
Number of Sequences: 37544
Number of extensions: 111688
Number of successful extensions: 218
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)