Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16k03
(374 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U20543-1|AAA63151.1| 115|Drosophila melanogaster minute(1)1B pr... 70 9e-13
BT029917-1|ABM92791.1| 115|Drosophila melanogaster GH03995p pro... 70 9e-13
AY070831-1|AAL48453.1| 115|Drosophila melanogaster AT29875p pro... 70 9e-13
AL031581-5|CAA20892.1| 115|Drosophila melanogaster EG:115C2.7,F... 70 9e-13
AE014298-77|AAN09021.1| 115|Drosophila melanogaster CG7622-PD, ... 70 9e-13
AE014298-76|AAN09020.1| 115|Drosophila melanogaster CG7622-PC, ... 70 9e-13
AE014298-75|AAF45531.1| 115|Drosophila melanogaster CG7622-PB, ... 70 9e-13
AE014298-74|AAN09019.1| 115|Drosophila melanogaster CG7622-PA, ... 70 9e-13
AE014297-385|ABI31142.1| 1689|Drosophila melanogaster CG34113-PO... 29 1.9
AY051494-1|AAK92918.1| 818|Drosophila melanogaster GH14774p pro... 27 7.9
AF313621-1|AAL78208.1| 818|Drosophila melanogaster CTCF protein. 27 7.9
AE014296-1240|AAF50573.2| 818|Drosophila melanogaster CG8591-PA... 27 7.9
>U20543-1|AAA63151.1| 115|Drosophila melanogaster minute(1)1B
protein protein.
Length = 115
Score = 70.1 bits (164), Expect = 9e-13
Identities = 35/60 (58%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Frame = -2
Query: 343 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVG 167
MA R+E+A+GL KGHKT+KI K DK ++ +R +RLK +QT+H+KF+RDLVREVVG
Sbjct: 1 MAVRYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVG 59
>BT029917-1|ABM92791.1| 115|Drosophila melanogaster GH03995p
protein.
Length = 115
Score = 70.1 bits (164), Expect = 9e-13
Identities = 35/60 (58%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Frame = -2
Query: 343 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVG 167
MA R+E+A+GL KGHKT+KI K DK ++ +R +RLK +QT+H+KF+RDLVREVVG
Sbjct: 1 MAVRYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVG 59
>AY070831-1|AAL48453.1| 115|Drosophila melanogaster AT29875p
protein.
Length = 115
Score = 70.1 bits (164), Expect = 9e-13
Identities = 35/60 (58%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Frame = -2
Query: 343 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVG 167
MA R+E+A+GL KGHKT+KI K DK ++ +R +RLK +QT+H+KF+RDLVREVVG
Sbjct: 1 MAVRYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVG 59
>AL031581-5|CAA20892.1| 115|Drosophila melanogaster
EG:115C2.7,FBgn0002579;RpL36 protein.
Length = 115
Score = 70.1 bits (164), Expect = 9e-13
Identities = 35/60 (58%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Frame = -2
Query: 343 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVG 167
MA R+E+A+GL KGHKT+KI K DK ++ +R +RLK +QT+H+KF+RDLVREVVG
Sbjct: 1 MAVRYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVG 59
>AE014298-77|AAN09021.1| 115|Drosophila melanogaster CG7622-PD,
isoform D protein.
Length = 115
Score = 70.1 bits (164), Expect = 9e-13
Identities = 35/60 (58%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Frame = -2
Query: 343 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVG 167
MA R+E+A+GL KGHKT+KI K DK ++ +R +RLK +QT+H+KF+RDLVREVVG
Sbjct: 1 MAVRYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVG 59
>AE014298-76|AAN09020.1| 115|Drosophila melanogaster CG7622-PC,
isoform C protein.
Length = 115
Score = 70.1 bits (164), Expect = 9e-13
Identities = 35/60 (58%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Frame = -2
Query: 343 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVG 167
MA R+E+A+GL KGHKT+KI K DK ++ +R +RLK +QT+H+KF+RDLVREVVG
Sbjct: 1 MAVRYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVG 59
>AE014298-75|AAF45531.1| 115|Drosophila melanogaster CG7622-PB,
isoform B protein.
Length = 115
Score = 70.1 bits (164), Expect = 9e-13
Identities = 35/60 (58%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Frame = -2
Query: 343 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVG 167
MA R+E+A+GL KGHKT+KI K DK ++ +R +RLK +QT+H+KF+RDLVREVVG
Sbjct: 1 MAVRYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVG 59
>AE014298-74|AAN09019.1| 115|Drosophila melanogaster CG7622-PA,
isoform A protein.
Length = 115
Score = 70.1 bits (164), Expect = 9e-13
Identities = 35/60 (58%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Frame = -2
Query: 343 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVG 167
MA R+E+A+GL KGHKT+KI K DK ++ +R +RLK +QT+H+KF+RDLVREVVG
Sbjct: 1 MAVRYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVG 59
>AE014297-385|ABI31142.1| 1689|Drosophila melanogaster CG34113-PO,
isoform O protein.
Length = 1689
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -1
Query: 368 SSDLSVRNHGSSF*NRSRPAKRPQNN*NIRWPQGYHRQSHQN*AS*TKGSSNE 210
SS S R+ S+ ++S K+P N R + H+Q HQ KG++NE
Sbjct: 811 SSSRSRRSSSSNINSKSNNGKQPAKYFNKR-QKNMHKQKHQQKLKQLKGTTNE 862
>AY051494-1|AAK92918.1| 818|Drosophila melanogaster GH14774p
protein.
Length = 818
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 322 AVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHS 203
++ LR T K + + KAI +RPAR + K S
Sbjct: 131 SINLRPAKSTPKATTSKPPPEPKAISVRPARAAAAKAKQS 170
>AF313621-1|AAL78208.1| 818|Drosophila melanogaster CTCF protein.
Length = 818
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 322 AVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHS 203
++ LR T K + + KAI +RPAR + K S
Sbjct: 131 SINLRPAKSTPKATTSKPPPEPKAISVRPARAAAAKAKQS 170
>AE014296-1240|AAF50573.2| 818|Drosophila melanogaster CG8591-PA
protein.
Length = 818
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 322 AVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHS 203
++ LR T K + + KAI +RPAR + K S
Sbjct: 131 SINLRPAKSTPKATTSKPPPEPKAISVRPARAAAAKAKQS 170
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,870,792
Number of Sequences: 53049
Number of extensions: 189077
Number of successful extensions: 326
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 982468965
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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