Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16k02
         (843 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4505|AAF56987.1|  156|Drosophila melanogaster CG7911-PA...    53   6e-07
X99293-1|CAA67679.1|  152|Drosophila melanogaster CRP1 protein p...    48   1e-05
U59498-1|AAC47295.1|  152|Drosophila melanogaster nucleoplasmin-...    48   1e-05
U59497-1|AAC47294.1|  121|Drosophila melanogaster nucleoplasmin-...    48   1e-05
AY119592-1|AAM50246.1|  152|Drosophila melanogaster LD16456p pro...    48   1e-05
AE014297-4506|AAF56988.1|  152|Drosophila melanogaster CG7917-PA...    48   1e-05
AY061181-1|AAL28729.1|  158|Drosophila melanogaster LD14807p pro...    30   4.6  

>AE014297-4505|AAF56987.1|  156|Drosophila melanogaster CG7911-PA
           protein.
          Length = 156

 Score = 52.8 bits (121), Expect = 6e-07
 Identities = 24/37 (64%), Positives = 29/37 (78%)
 Frame = -3

Query: 841 AVXKVGESRHVRLDXEFPDAPVTFTLVQGSGPVHLIG 731
           AV KVGE+R +R + EFP+  VTF LVQGSGPVH+ G
Sbjct: 75  AVLKVGETRSLRPNVEFPNGSVTFKLVQGSGPVHVCG 111


>X99293-1|CAA67679.1|  152|Drosophila melanogaster CRP1 protein
           protein.
          Length = 152

 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 21/40 (52%), Positives = 30/40 (75%)
 Frame = -3

Query: 841 AVXKVGESRHVRLDXEFPDAPVTFTLVQGSGPVHLIGHHL 722
           AV K GE+R V  D EF ++ VTF L++GSGPV++ GH++
Sbjct: 65  AVLKAGETRAVNPDVEFYESKVTFKLIKGSGPVYIHGHNI 104


>U59498-1|AAC47295.1|  152|Drosophila melanogaster
           nucleoplasmin-like protein protein.
          Length = 152

 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 21/40 (52%), Positives = 30/40 (75%)
 Frame = -3

Query: 841 AVXKVGESRHVRLDXEFPDAPVTFTLVQGSGPVHLIGHHL 722
           AV K GE+R V  D EF ++ VTF L++GSGPV++ GH++
Sbjct: 65  AVLKAGETRAVNPDVEFYESKVTFKLIKGSGPVYIHGHNI 104


>U59497-1|AAC47294.1|  121|Drosophila melanogaster
           nucleoplasmin-like protein-short protein.
          Length = 121

 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 21/40 (52%), Positives = 30/40 (75%)
 Frame = -3

Query: 841 AVXKVGESRHVRLDXEFPDAPVTFTLVQGSGPVHLIGHHL 722
           AV K GE+R V  D EF ++ VTF L++GSGPV++ GH++
Sbjct: 34  AVLKAGETRAVNPDVEFYESKVTFKLIKGSGPVYIHGHNI 73


>AY119592-1|AAM50246.1|  152|Drosophila melanogaster LD16456p
           protein.
          Length = 152

 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 21/40 (52%), Positives = 30/40 (75%)
 Frame = -3

Query: 841 AVXKVGESRHVRLDXEFPDAPVTFTLVQGSGPVHLIGHHL 722
           AV K GE+R V  D EF ++ VTF L++GSGPV++ GH++
Sbjct: 65  AVLKAGETRAVNPDVEFYESKVTFKLIKGSGPVYIHGHNI 104


>AE014297-4506|AAF56988.1|  152|Drosophila melanogaster CG7917-PA
           protein.
          Length = 152

 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 21/40 (52%), Positives = 30/40 (75%)
 Frame = -3

Query: 841 AVXKVGESRHVRLDXEFPDAPVTFTLVQGSGPVHLIGHHL 722
           AV K GE+R V  D EF ++ VTF L++GSGPV++ GH++
Sbjct: 65  AVLKAGETRAVNPDVEFYESKVTFKLIKGSGPVYIHGHNI 104


>AY061181-1|AAL28729.1|  158|Drosophila melanogaster LD14807p
           protein.
          Length = 158

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 641 LSSRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTA 519
           L  R ++     PR K+R  R+ P+ + HRP+R     +TA
Sbjct: 56  LLPRRQLPAMTAPRKKRRPRRLPPQQRRHRPKRPSLQAKTA 96


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,850,323
Number of Sequences: 53049
Number of extensions: 570786
Number of successful extensions: 1172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4024321392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)