Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16k01
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   4.7  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   8.2  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    26   8.2  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 650 FRNNPRSFGNVRTYCGTLHSRLFELVYCAK 739
           + N  +SF +V  YCGT      + + CA+
Sbjct: 611 YENYKQSFSDVTIYCGTSMFHSHKFILCAR 640


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 576 YPVSHDTAHLFFLHALDVMRRGYIASRGIKDRPAKVSEFVRAIHGCL 436
           Y  SH  AH +F    DV+      +  +K  P   ++    IHGCL
Sbjct: 698 YVKSHYDAHKYFPIVFDVLMNISNMAPHVKVFPFNTNQKRLIIHGCL 744


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 695 GTLHSRLFELVYCAKE 742
           G LHSR+  L+YC K+
Sbjct: 259 GLLHSRIRRLIYCKKQ 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,569,262
Number of Sequences: 5004
Number of extensions: 75183
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)