Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16k01
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0127 + 12573429-12574857,12575269-12575903                       30   2.1  
12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996...    28   8.6  
12_01_0788 + 7192937-7192994,7193074-7193160,7193242-7193307,719...    28   8.6  
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961...    28   8.6  

>09_03_0127 + 12573429-12574857,12575269-12575903
          Length = 687

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 600 NINFKFYSRYEENKSGGFATTHGHSVTCELIVVHFIHGCLS 722
           N N  F S YEE+++GG A  HG+     ++    +  C+S
Sbjct: 520 NANLSFSSSYEEDEAGG-AIAHGNLKASNILFTATMEPCIS 559


>12_01_1019 -
           10398880-10399314,10399401-10399481,10399560-10399652,
           10399784-10399999,10403837-10403935,10404244-10404867,
           10404946-10405033,10405167-10405430,10406437-10406504
          Length = 655

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 332 CSWFDLKRNKPI 367
           C W+DL+RNKP+
Sbjct: 232 CDWYDLERNKPV 243


>12_01_0788 +
           7192937-7192994,7193074-7193160,7193242-7193307,
           7193447-7193555,7194522-7194785,7194919-7195006,
           7195085-7195708,7196017-7196140,7196195-7196337,
           7196434-7196649,7196781-7196873,7196952-7197032,
           7197120-7197504,7197599-7197636
          Length = 791

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 332 CSWFDLKRNKPI 367
           C W+DL+RNKP+
Sbjct: 316 CDWYDLERNKPV 327


>09_02_0469 -
           9610883-9611338,9611749-9611871,9612199-9612375,
           9614416-9614501,9615519-9615678,9616122-9617438,
           9619463-9620428,9621452-9621766
          Length = 1199

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 372 QLIGLFLFKSNQEQKGCSSYPIRTSPDALTSVKFLNLALCS 250
           Q  G   +  +     CS   +  S + LTS++FLNL+ CS
Sbjct: 705 QSFGQLAYLKSLNLSYCSDLKLLESFECLTSLRFLNLSNCS 745


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,810,172
Number of Sequences: 37544
Number of extensions: 439403
Number of successful extensions: 967
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)