Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16k01
         (883 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ459772-1|CAD30834.1| 1478|Drosophila melanogaster Fanconi anem...    31   2.8  
AE014297-2866|AAN13836.2| 1478|Drosophila melanogaster CG17269-P...    31   2.8  
AF132183-1|AAD34771.1|  834|Drosophila melanogaster unknown prot...    29   8.5  
AE014297-3383|AAN13957.2|  619|Drosophila melanogaster CG10217-P...    29   8.5  
AE014297-3382|AAF56181.2|  619|Drosophila melanogaster CG10217-P...    29   8.5  
AE014297-2518|AAF55551.2|  834|Drosophila melanogaster CG18617-P...    29   8.5  
AE014297-2517|AAF55552.2|  834|Drosophila melanogaster CG18617-P...    29   8.5  

>AJ459772-1|CAD30834.1| 1478|Drosophila melanogaster Fanconi anemia
            complementationgroup D2 protein protein.
          Length = 1478

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 573  DKNEVPYYKNINFKFYSRYEENKSGGFATTHGHSVTCELI 692
            +K  VP   N+ F+++ +YE++        H H + C L+
Sbjct: 1120 EKQSVPQLANLTFQYFLKYEKSVLNLSTAVHLHRLLCNLL 1159


>AE014297-2866|AAN13836.2| 1478|Drosophila melanogaster CG17269-PA
            protein.
          Length = 1478

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 573  DKNEVPYYKNINFKFYSRYEENKSGGFATTHGHSVTCELI 692
            +K  VP   N+ F+++ +YE++        H H + C L+
Sbjct: 1120 EKQSVPQLANLTFQYFLKYEKSVLNLSTAVHLHRLLCNLL 1159


>AF132183-1|AAD34771.1|  834|Drosophila melanogaster unknown
           protein.
          Length = 834

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 375 VQLIGLFLFKSNQEQKGCSSYPIRTSPDALTSVKFLNLALC 253
           +  I + LFK+ +  KGC+ +   + P    +  F+ +ALC
Sbjct: 608 IMFINMMLFKNTEPPKGCNEFMFESQPQLQKA--FVLIALC 646


>AE014297-3383|AAN13957.2|  619|Drosophila melanogaster CG10217-PB,
           isoform B protein.
          Length = 619

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 728 TLTQTTVNEVYHNKFARYRMTVGCCETSR 642
           ++++T +NE Y+   ARYR T+  C   R
Sbjct: 306 SISETHINETYYPDKARYRKTIYVCRERR 334


>AE014297-3382|AAF56181.2|  619|Drosophila melanogaster CG10217-PA,
           isoform A protein.
          Length = 619

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 728 TLTQTTVNEVYHNKFARYRMTVGCCETSR 642
           ++++T +NE Y+   ARYR T+  C   R
Sbjct: 306 SISETHINETYYPDKARYRKTIYVCRERR 334


>AE014297-2518|AAF55551.2|  834|Drosophila melanogaster CG18617-PB,
           isoform B protein.
          Length = 834

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 375 VQLIGLFLFKSNQEQKGCSSYPIRTSPDALTSVKFLNLALC 253
           +  I + LFK+ +  KGC+ +   + P    +  F+ +ALC
Sbjct: 608 IMFINMMLFKNTEPPKGCNEFMFESQPQLQKA--FVLIALC 646


>AE014297-2517|AAF55552.2|  834|Drosophila melanogaster CG18617-PA,
           isoform A protein.
          Length = 834

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 375 VQLIGLFLFKSNQEQKGCSSYPIRTSPDALTSVKFLNLALC 253
           +  I + LFK+ +  KGC+ +   + P    +  F+ +ALC
Sbjct: 608 IMFINMMLFKNTEPPKGCNEFMFESQPQLQKA--FVLIALC 646


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,216,004
Number of Sequences: 53049
Number of extensions: 769102
Number of successful extensions: 1602
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4291240668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)