Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16k01
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72505-5|CAE11304.1|  333|Caenorhabditis elegans Hypothetical pr...    32   0.62 
Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical pr...    30   1.9  

>Z72505-5|CAE11304.1|  333|Caenorhabditis elegans Hypothetical
           protein C50C10.8 protein.
          Length = 333

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
 Frame = -2

Query: 420 LSRGDRIFSLVMCYAVQLIGLF---LFKSNQEQKG-CSSYPIRTSPDALTSVKFLNLALC 253
           L+    +FSL+MCY +  I  F   LF+ N    G  +S+  +  P    +  F  L L 
Sbjct: 61  LTLDGHLFSLLMCYFITNIAFFFSDLFRFNLPSSGLITSWCAKLQP----NYSFTLLILV 116

Query: 252 SDRL-FLLVVLPLATSICK*TL 190
           +D L + +++LP   SI + TL
Sbjct: 117 ADFLNYCILILPFLVSIIRLTL 138


>Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical
           protein R07B1.9 protein.
          Length = 770

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 558 CRGTPDKNEVPYYKNINFKFYSRYEENKSGGFATTHGHSVTCELIVVH-FIHGC 716
           C  T D N +P+YKN + KFY  Y+  + G  + T   +    L+V H  + GC
Sbjct: 264 CLKTVDNNAMPFYKN-DLKFY--YQGREVGDPSITSTDAPRYILVVAHGVLLGC 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,698,834
Number of Sequences: 27780
Number of extensions: 421960
Number of successful extensions: 903
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)