Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16k01
(883 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 23 2.8
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 23 2.8
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 23 2.8
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 23 2.8
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 22 8.6
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 22 8.6
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 22 8.6
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 22 8.6
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 8.6
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 8.6
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 22 8.6
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 23.4 bits (48), Expect = 2.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 201 YK*TWRAEARPTKTIDRYREPSLKILHSL 287
Y+ TW+ +R +R REP KI+ SL
Sbjct: 59 YRETWKERSRDRTERERSREP--KIISSL 85
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.4 bits (48), Expect = 2.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 201 YK*TWRAEARPTKTIDRYREPSLKILHSL 287
Y+ TW+ +R +R REP KI+ SL
Sbjct: 59 YRETWKERSRDRTERERSREP--KIISSL 85
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.4 bits (48), Expect = 2.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 201 YK*TWRAEARPTKTIDRYREPSLKILHSL 287
Y+ TW+ +R +R REP KI+ SL
Sbjct: 59 YRETWKERSRDRTERERSREP--KIISSL 85
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.4 bits (48), Expect = 2.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 201 YK*TWRAEARPTKTIDRYREPSLKILHSL 287
Y+ TW+ +R +R REP KI+ SL
Sbjct: 59 YRETWKERSRDRTERERSREP--KIISSL 85
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.8 bits (44), Expect = 8.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 86 NRLIYRNSGKYKKIQ 130
N+ I+ N+ YKK+Q
Sbjct: 87 NKTIHNNNNNYKKLQ 101
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.8 bits (44), Expect = 8.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 86 NRLIYRNSGKYKKIQ 130
N+ I+ N+ YKK+Q
Sbjct: 87 NKTIHNNNNNYKKLQ 101
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 21.8 bits (44), Expect = 8.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 86 NRLIYRNSGKYKKIQ 130
N+ I+ N+ YKK+Q
Sbjct: 87 NKTIHNNNNNYKKLQ 101
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.8 bits (44), Expect = 8.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 86 NRLIYRNSGKYKKIQ 130
N+ I+ N+ YKK+Q
Sbjct: 87 NKTIHNNNNNYKKLQ 101
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -2
Query: 420 LSRGDRIFSLVMCYAVQLIGLF 355
L + +F ++C+ LIGLF
Sbjct: 411 LRKRKELFIAIVCFVSYLIGLF 432
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -2
Query: 420 LSRGDRIFSLVMCYAVQLIGLF 355
L + +F ++C+ LIGLF
Sbjct: 464 LRKRKELFIAIVCFVSYLIGLF 485
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.8 bits (44), Expect = 8.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 86 NRLIYRNSGKYKKIQ 130
N+ I+ N+ YKK+Q
Sbjct: 320 NKTIHNNNNNYKKLQ 334
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,890
Number of Sequences: 438
Number of extensions: 5698
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -