Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16j22
         (131 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    24   2.4  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    23   7.3  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        23   7.3  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    22   9.7  

>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 128 LALILQGLVPLSDAITFAEQKLN--CKYKKIEF 36
           L L    L PLS  +TFA  K++  C+Y+   F
Sbjct: 385 LLLFSDALGPLSSILTFASNKVSRLCEYQADAF 417


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 49   LYLQFSFCSANVI 87
            LYL+ SFCS+N +
Sbjct: 1208 LYLKVSFCSSNFL 1220


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 126 SFNITGSGSVVRRYNVCGTKTK 61
           S+N+ G G+   +Y+ C  K K
Sbjct: 110 SYNLAGGGNFQYQYSTCQGKRK 131


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 101  PLSDAITFAEQKLNCKYKKIEF 36
            PL  + + A + L+CKYK+  F
Sbjct: 1402 PLPKSFSKAVEALSCKYKQSGF 1423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 357,952
Number of Sequences: 5004
Number of extensions: 2906
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 24
effective length of database: 2,242,382
effective search space used: 42605258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)