Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16j22
         (131 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1283|AAF52520.2|  452|Drosophila melanogaster CG13788-P...    26   8.3  

>AE014134-1283|AAF52520.2|  452|Drosophila melanogaster CG13788-PA,
           isoform A protein.
          Length = 452

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   N*IQNIWYN*LNSIFLYLQFSFC 72
           N ++  WY  LN+IF +L  ++C
Sbjct: 54  NSLEQSWYGFLNAIFRWLLLAYC 76


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,778,681
Number of Sequences: 53049
Number of extensions: 28820
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 24,988,368
effective HSP length: 24
effective length of database: 23,715,192
effective search space used: 450588648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)