Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16j22
         (131 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   1.8  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    19   5.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   5.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    18   9.6  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     18   9.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 6/25 (24%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 40  SIFLYLQF-SFCSANVIASDNGTRP 111
           ++F+++    +C  N++  D+ T P
Sbjct: 315 TVFVFMALMEYCLVNIVLGDSDTPP 339


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 128 LALILQGLVPLSDAITFAEQKLNC 57
           L L+ + L  +SDAI       NC
Sbjct: 240 LNLVAETLPQVSDAIPLLGSYFNC 263


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 128 LALILQGLVPLSDAITFAEQKLNC 57
           L L+ + L  +SDAI       NC
Sbjct: 240 LNLVAETLPQVSDAIPLLGSYFNC 263


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 128 LALILQGLVPLSDAITFAEQKLNC 57
           L L+ + L  +SDAI       NC
Sbjct: 240 LNLVAETLPQVSDAIPLLGSYFNC 263


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 128 LALILQGLVPLSDAITFAEQKLNC 57
           L L+ + L  +SDAI       NC
Sbjct: 308 LNLVAETLPQVSDAIPLLGSYFNC 331


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 67  FCSANVIASD 96
           FCS  VIA+D
Sbjct: 340 FCSVVVIAAD 349


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -3

Query: 120 NITGSGSVVRRYNVC 76
           +I G+G+++ +  VC
Sbjct: 214 SIQGTGTIILKKTVC 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,234
Number of Sequences: 438
Number of extensions: 213
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 24
effective length of database: 135,831
effective search space used:  2580789
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)