Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16j11
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 57 2e-08
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 45 5e-05
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 36 0.025
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 36 0.033
01_05_0146 + 18591235-18591345,18591662-18591830,18592282-185923... 32 0.40
05_04_0019 + 17197271-17197445,17197937-17198067,17198129-171981... 30 1.6
03_04_0062 + 16965323-16966024 30 2.1
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880... 29 3.7
11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712... 29 4.9
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 29 4.9
06_01_0211 + 1604799-1605037,1605420-1605575,1605972-1606043,160... 28 6.5
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 6.5
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 28 8.6
05_05_0055 + 21977546-21978061,21978144-21978162,21978168-219784... 28 8.6
05_01_0210 + 1583176-1584177 28 8.6
01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557 28 8.6
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 56.8 bits (131), Expect = 2e-08
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Frame = -2
Query: 436 GLNKFNSVVAHPGS---MSNETTRVLFGHFPAGTSLHNMAKYGQAMTNDKFVKFNYGHQ- 269
G++ +N + A G + N + +V H P T+ NM Q + K++YG+
Sbjct: 314 GIDCYNLMSAFTGDNCCLDNSSVQVFLAHEPQATATKNMIHLAQMIRGGTIAKYDYGNAG 373
Query: 268 KNLELYGTSEPPEYNISAVSP--PVVVIYGENDGLVDTKDVEWAMERL 131
N E YG + PP Y+++A+ P+ + YG D L D +DV + L
Sbjct: 374 DNREHYGQATPPAYDVTAIPGDFPLFLSYGGRDSLSDVQDVSRLLRAL 421
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = -2
Query: 295 FVKFNYGHQKNLELYGTSEPPEYNISAV--SPPVVVIYGENDGLVDTKDVEWAMERLPNV 122
F K++YG NL YG PP +++S++ S P+ + YG D L D DV+ + L +
Sbjct: 355 FAKYDYGLLGNLRRYGHLRPPAFDLSSIPESLPIWMGYGGLDALADVTDVQRTIRELGST 414
Query: 121 LEAVLIKD 98
E + I D
Sbjct: 415 PELLYIGD 422
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 36.3 bits (80), Expect = 0.025
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -2
Query: 349 GTSLHNMAKYGQAMTNDKFVKFNYGH-QKNLELYGTSEPPEYNISAVSP--PVVVIYGEN 179
G + +++ A+ + K++Y N+ YG ++PP Y+++A+ P+ + YG
Sbjct: 298 GMNCYDLLTSFTAVRDGVLTKYDYVMPDANVARYGQADPPAYDMAAIPAWFPIFLSYGGR 357
Query: 178 DGLVDTKDVEWAMERL 131
D L D DV ++ L
Sbjct: 358 DSLSDPADVALLLDDL 373
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 35.9 bits (79), Expect = 0.033
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 289 KFNYGHQK-NLELYGTSEPPEYNISAV--SPPVVVIYGENDGLVDTKDVEWAMERL 131
+F+YG+ K N++ Y PP YN+S++ P+ + +G D L D D + L
Sbjct: 275 RFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTHGGEDYLGDVPDTRHLLRTL 330
>01_05_0146 +
18591235-18591345,18591662-18591830,18592282-18592334,
18592369-18592487,18592618-18593698
Length = 510
Score = 32.3 bits (70), Expect = 0.40
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -2
Query: 349 GTSLHNMAKYGQAMTNDKFVKFNYGHQ-KNLELYGTSEPPEY--NISAVSPPVVVIYGEN 179
G S H Q +F ++YG N+E YGT EP + + + PV ++ G+
Sbjct: 345 GVSFHVALHLAQIKRAKRFQMYDYGSPVANMEAYGTPEPLDLGAHYGLIDIPVDLVAGQR 404
Query: 178 DGLVDTKDVE 149
D ++ V+
Sbjct: 405 DRVISPSMVK 414
>05_04_0019 +
17197271-17197445,17197937-17198067,17198129-17198164,
17198196-17198333,17198503-17198601,17198750-17199124
Length = 317
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -2
Query: 262 LELYGTSEPPEYNISAVSPPVVVIYGENDGLVDTKDVEWAMERLPNVLEAVLIKDPAWN 86
LEL TS E ++S VS P +++GE D + D + ER + + + + W+
Sbjct: 178 LELLRTSISVEQSLSQVSIPFFILHGEADKVTDPEVSRALYERAASADKTIKLYPGMWH 236
>03_04_0062 + 16965323-16966024
Length = 233
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 157 PWCPLIRHSPRKLPR-LGVIQPICYTLAAPR 246
P C H+ +PR LG I P+CYT R
Sbjct: 202 PMCAANSHARTPIPRHLGAITPVCYTFVLDR 232
>03_05_0064 -
20385290-20385346,20385452-20387133,20387266-20388083,
20388184-20388303,20389036-20389305,20390094-20390269
Length = 1040
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = -2
Query: 472 HFTKFTEGLCDAGLNKFNSVVAHPGSMSNETTRVLFGHFPAGTSLHNMAKYGQAMTNDKF 293
HF+ + + + KF + H G+ S + + H G + H + G+A T+ F
Sbjct: 250 HFSAIDKARHRSYMEKFQTCKKHQGTCSKDLMFNISDHSLVGRTCHRF-EVGRAHTSKAF 308
Query: 292 VKFNYGHQKNL 260
+F+ H + L
Sbjct: 309 DEFHAFHHEQL 319
>11_06_0152 +
20669949-20670326,20670887-20670997,20671079-20671280,
20671393-20671675,20672145-20672234,20672366-20672473,
20672595-20672975,20673250-20673324,20673685-20673797,
20676233-20676742,20676807-20677300
Length = 914
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 635 DSFGSGDETDEYEINDVSKADSSS 564
D+F SGDE DE + ++ +AD SS
Sbjct: 68 DAFSSGDEIDEDAVVELGEADPSS 91
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 388 NETTRVLFGHFPAGTSLHNMAKYGQAMTNDKFVKFNYGHQKNLEL 254
NE+ R+ G +P+ T LH + Y Q T + V N G +NL +
Sbjct: 463 NESMRMSLGSWPSLTKLHISSSYNQMATLE--VDTNQGPLENLRI 505
>06_01_0211 +
1604799-1605037,1605420-1605575,1605972-1606043,
1606325-1606396,1606608-1606679,1606777-1606848,
1606936-1607007,1607092-1607160,1607278-1607349,
1607630-1607701,1607786-1607857,1607940-1608011,
1608100-1608171,1608286-1608357,1608449-1608520,
1608633-1608704,1608801-1608872,1608962-1609033,
1609120-1609191,1609283-1609353,1609439-1609570,
1609676-1610014,1610097-1610467,1610599-1610928,
1611115-1611150
Length = 964
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 673 SERPNYCEKIKLMIALAPATRQTNTKSTMYRRL 575
S+RP E +++++L PA+ T K+ Y RL
Sbjct: 887 SDRPTMHEVARVLLSLLPASAMTTPKTVDYSRL 919
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 266 LLMSVVELHKFVICHCLSVLCHVVQRCSSREMSKEHSCRFV*HRSRVSNDRVKL 427
+++ V+ ++C CL+ +C S+E+ K+H + + S + ND ++L
Sbjct: 1908 IVLPVITSLLILMCICLAWICKSRGIHRSKEIQKKHRLQHLKDSSELENDNLEL 1961
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -2
Query: 250 GTSEPPEYNISAVSPPVVVIYGENDGLVDTKDVEWAMERLPNVLEAVLIKDPAWNHMR 77
GT+EPP ++ +S +V G D + + + + R+ N + L DPA HMR
Sbjct: 2136 GTAEPPLSSVFCLSASLVSSCGLRDCIPLSGNANMSFWRVDNAFGSFLPGDPA--HMR 2191
>05_05_0055 +
21977546-21978061,21978144-21978162,21978168-21978486,
21978779-21978799,21980780-21980857,21981116-21981359
Length = 398
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 245 GSVQF*ILLMSVVELHKFVICHCLSVLCHVVQRCSSREMSKE 370
G +Q + VEL KF CL L H+VQ C E K+
Sbjct: 243 GLMQTTVFAAPNVELDKFAAL-CLIFLAHIVQVCFKEETDKK 283
>05_01_0210 + 1583176-1584177
Length = 333
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 647 DQTHDSFGSGDETDEYEIN-DVSKADSSSAG 558
D HD G GDE DE E + V + D ++G
Sbjct: 182 DDDHDGGGDGDEDDEEEADQQVDEEDDGASG 212
>01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557
Length = 912
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 502 KHPWKKFHVDLP-SSTASPNPALLESA 579
+H W FH LP SS+ASP+P+ S+
Sbjct: 170 RHLWPLFHYMLPFSSSASPSPSSSSSS 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,498,250
Number of Sequences: 37544
Number of extensions: 441000
Number of successful extensions: 1287
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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