Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16j11
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical ... 101 7e-22
U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical pr... 76 2e-14
Z79696-2|CAB01973.1| 405|Caenorhabditis elegans Hypothetical pr... 75 5e-14
Z81055-8|CAB02896.2| 409|Caenorhabditis elegans Hypothetical pr... 74 9e-14
AF067942-2|AAG45574.1| 403|Caenorhabditis elegans Hypothetical ... 70 2e-12
Z70780-7|CAA94824.1| 411|Caenorhabditis elegans Hypothetical pr... 64 1e-10
AF022976-9|AAC69088.2| 404|Caenorhabditis elegans Hypothetical ... 63 2e-10
AL117200-4|CAB60584.1| 401|Caenorhabditis elegans Hypothetical ... 62 3e-10
AF067942-3|AAL11486.1| 351|Caenorhabditis elegans Hypothetical ... 43 3e-04
Z69637-3|CAA93468.1| 173|Caenorhabditis elegans Hypothetical pr... 32 0.36
AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical ... 30 1.5
Z81132-4|CAB03440.1| 339|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z49937-8|CAD44113.1| 546|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z49867-4|CAD44109.1| 546|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical
protein Y57E12B.3 protein.
Length = 684
Score = 101 bits (241), Expect = 7e-22
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 3/215 (1%)
Frame = -2
Query: 718 YVGFSQGAGTFFIMCSERPNYCEKIKLMIALAPATRQTNTKSTMYRRLTQAVQGWETLLT 539
YVG SQGA T F SE P +KI+ A+AP R ++ K +++ L Q + + +
Sbjct: 413 YVGHSQGALTMFAKMSEDPEMSKKIRKFFAMAPVARMSHVKG-LFQNLGQIYEQYNLVYQ 471
Query: 538 TAGLHEIFSKGALSQEFVAFFCHFTKFTEGLCDAGLNKFNSVVAHPGS--MSNETTRVLF 365
G E + ++ FC LC+ F V+ P S +N +
Sbjct: 472 VFGDGEFLTNNIFTKLLTDIFCD-QAVNNPLCE----NFIFAVSGPNSNQFNNSRIGIYL 526
Query: 364 GHFPAGTSLHNMAKYGQAMTNDKFVKFNYGHQKNLELYGTSEPPEYNISAVSPPVVVIYG 185
H PAGTS N+ + Q + + +F++G NL++YG PPEY+I ++ + + Y
Sbjct: 527 AHNPAGTSSRNILHFAQMVKKKRMSRFDHGKDLNLKIYGAPSPPEYDIRKINSSIYLFYS 586
Query: 184 ENDGLVDTKDVE-WAMERLPNVLEAVLIKDPAWNH 83
+ D L + KDVE + + LP+ K +NH
Sbjct: 587 DFDWLANPKDVEGFLIPMLPSKTLKKATKLRDFNH 621
>U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical
protein K04A8.5 protein.
Length = 411
Score = 76.2 bits (179), Expect = 2e-14
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 2/192 (1%)
Frame = -2
Query: 718 YVGFSQGAGTFFIMCSERPNYCEKIKLMIALAPATRQTNTKSTMYRRLTQAVQGWETLLT 539
Y GFS G T F S P + KIK ALAP + + +E +
Sbjct: 173 YTGFSLGTLTMFAKLSTDPKFSRKIKKYFALAPIGSIKHAHGVFLFLGRHFGKDYEEYVK 232
Query: 538 TAGLHEIFSKGALSQEFVAFFCHFTKFTEGLCDAGLNKFNSVVAHPGSMSNETT-RVLFG 362
G E+F L ++ V + C E C F + N+T V
Sbjct: 233 KHGSDELFGSSLLFKKIVKYTCGLFDTLEEFCSDITLLF---IGTANENWNQTRIPVYLA 289
Query: 361 HFPAGTSLHNMAKYGQAMTNDKFVKFNYGHQKNLELYGTSEPPEYNISAVSP-PVVVIYG 185
H PAG+S + MA Q + F+ G +KNL+ YG PP+YN + ++ P+ + +
Sbjct: 290 HTPAGSSSNVMAHLDQMFSYGGVPTFDMGEEKNLKAYGQKLPPQYNFTGIADVPIYLFWS 349
Query: 184 ENDGLVDTKDVE 149
++D L +D+E
Sbjct: 350 DDDWLSTKQDLE 361
>Z79696-2|CAB01973.1| 405|Caenorhabditis elegans Hypothetical
protein F54F3.3 protein.
Length = 405
Score = 74.9 bits (176), Expect = 5e-14
Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 3/192 (1%)
Frame = -2
Query: 718 YVGFSQGAGTFFIMCSE-RPNYCEKIKLMIALAPATRQTNTKSTMYRRLTQAVQGWETLL 542
Y+G SQG T F SE + + KIK ALAP + K + ++
Sbjct: 165 YIGHSQGTLTMFSRLSEDKVGWGNKIKKFFALAPVGSVKHIKGALKFFADYFSLEFDGWF 224
Query: 541 TTAGLHEIFSKGALSQEFVAFFCHFTKFTEGLCDAGLNKFNSVVAHPGSMSNETTRV--L 368
G E + + C K G+CD + ++A P S TRV
Sbjct: 225 DVFGSGEFLPNNWIMKLVSESVCAGLKVEAGVCDDVM----FLIAGPESNQLNATRVPIY 280
Query: 367 FGHFPAGTSLHNMAKYGQAMTNDKFVKFNYGHQKNLELYGTSEPPEYNISAVSPPVVVIY 188
H PAGTS N+ + Q + + K++YG + N + YG + P Y+ + V+ PV + +
Sbjct: 281 VAHTPAGTSTQNIVHWIQMVRHGGTPKYDYGEKGNKKHYGQANVPAYDFTTVNRPVYLYW 340
Query: 187 GENDGLVDTKDV 152
G++D L D DV
Sbjct: 341 GDSDWLADPTDV 352
>Z81055-8|CAB02896.2| 409|Caenorhabditis elegans Hypothetical
protein F01G10.7 protein.
Length = 409
Score = 74.1 bits (174), Expect = 9e-14
Identities = 52/213 (24%), Positives = 96/213 (45%)
Frame = -2
Query: 718 YVGFSQGAGTFFIMCSERPNYCEKIKLMIALAPATRQTNTKSTMYRRLTQAVQGWETLLT 539
Y+G SQG F +E P + +KI+ ALAP ++ T+ + E LL
Sbjct: 163 YLGHSQGTMIMFSRLAENPEFAKKIRHFHALAPVATVSHIGGLFGLFGTKFLTYAEILLG 222
Query: 538 TAGLHEIFSKGALSQEFVAFFCHFTKFTEGLCDAGLNKFNSVVAHPGSMSNETTRVLFGH 359
+ S Q+ +++ C F + +C + + + + V H
Sbjct: 223 RLPYSPL-SIPRTVQKMISYMCS-RFFMQNICTLDIGFIDG---NEKMFNQSRVGVYLCH 277
Query: 358 FPAGTSLHNMAKYGQAMTNDKFVKFNYGHQKNLELYGTSEPPEYNISAVSPPVVVIYGEN 179
PA TS+ ++ + Q + + KF+YG N+ YG PPEY+++ ++ P + + +
Sbjct: 278 TPAATSVKDLQHWIQLVKSQTVSKFDYGTDGNIIEYGQPTPPEYDLTQINTPTYLYWSRD 337
Query: 178 DGLVDTKDVEWAMERLPNVLEAVLIKDPAWNHM 80
D L DT+D+ ++ N A ++ P ++HM
Sbjct: 338 DILADTQDIRDSILSKMNKTIAGSLELPHYSHM 370
>AF067942-2|AAG45574.1| 403|Caenorhabditis elegans Hypothetical
protein ZK6.7a protein.
Length = 403
Score = 69.7 bits (163), Expect = 2e-12
Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 8/221 (3%)
Frame = -2
Query: 718 YVGFSQGAGTFFIMCSERP-NYCEKIKLMIALAPATRQTNTK---STMYRRLTQAVQGWE 551
Y+G SQG T F S+ ++ +KIK ALAP + K S + GW
Sbjct: 163 YMGHSQGTLTMFSHLSKDDGSFAKKIKKFFALAPIGSVKHIKGFLSFFANYFSLEFDGWF 222
Query: 550 TLLTTAGLHEIFSKGALSQEFVAFFCHFTKFTEGLCDAGLNKFNSVVAHPGSMSNETTRV 371
+ G E + C K LCD L ++A P S TRV
Sbjct: 223 DIF---GAGEFLPNNWAMKLAAKDICGGLKVEADLCDNVL----FLIAGPESDQWNQTRV 275
Query: 370 --LFGHFPAGTSLHNMAKYGQAMTNDKFVKFNYGHQKNLELYGTSEPPEYNISAVSPPVV 197
H PAGTS N+ + Q + + +++G + N + YG + PPEY+ +A+ +
Sbjct: 276 PVYATHDPAGTSTQNIVHWMQMVHHGGVPAYDWGTKTNKKKYGQANPPEYDFTAIKGTKI 335
Query: 196 VIY-GENDGLVDTKDV-EWAMERLPNVLEAVLIKDPAWNHM 80
+Y + D L DT DV ++ + RL + A P +NH+
Sbjct: 336 YLYWSDADWLADTPDVPDYLLTRLNPAIVAQNNHLPDYNHL 376
>Z70780-7|CAA94824.1| 411|Caenorhabditis elegans Hypothetical
protein F46B6.8 protein.
Length = 411
Score = 64.1 bits (149), Expect = 1e-10
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 7/220 (3%)
Frame = -2
Query: 718 YVGFSQGAGTFFIMCSERPN--YCEKIKLMIALAPATRQTNTK---STMYRRLTQAVQGW 554
Y+G SQG F ++ + + +KIK ALAP N K S + + GW
Sbjct: 169 YMGHSQGTLIMFTHLAKDTDGSFAKKIKRYFALAPIGAVKNIKGFLSYFAHKFSPEFDGW 228
Query: 553 ETLLTTAGLHEIFSKGALSQEFVAFFCHFTKFTEGLCDAGLNKFNSVVAHPGSMSNETTR 374
L G + +++ C ++ LCD L + + S T
Sbjct: 229 YELF---GSKDFLPDNWITKMAAKDICGASEKEAELCDNELFLIGGPESDQWNASR--TA 283
Query: 373 VLFGHFPAGTSLHNMAKYGQAMTNDKFVKFNYGHQKNLELYGTSEPPEYNISAVSPPVVV 194
+ PAGTS N+ + Q + N + F++G + N + YG PPEY+ A+ +
Sbjct: 284 IYSSQDPAGTSTQNIVHWMQMVRNGRVPAFDWGKKINKKKYGQDTPPEYDFGAIKGTKIH 343
Query: 193 IY-GENDGLVDTKDV-EWAMERLPNVLEAVLIKDPAWNHM 80
+Y ++D L D D+ ++ ++ L + A + +NH+
Sbjct: 344 LYWSDDDWLGDPTDIHDFLLKELNPAVIAENVNLKEYNHL 383
>AF022976-9|AAC69088.2| 404|Caenorhabditis elegans Hypothetical
protein R11G11.14 protein.
Length = 404
Score = 62.9 bits (146), Expect = 2e-10
Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 7/196 (3%)
Frame = -2
Query: 718 YVGFSQGAGTFFIMCSERPN-YCEKIKLMIALAPATRQTNTK---STMYRRLTQAVQGWE 551
Y+G SQG T F S+ + +KIK ALAP + K S + GW
Sbjct: 164 YMGHSQGTLTMFSHLSKDDGIFAKKIKKFFALAPVGSVKDIKGFLSFFAHYFSLEFDGWF 223
Query: 550 TLLTTAGLHEIFSKGALSQEFVAFFCHFTKFTEGLCDAGLNKFNSVVAHPGSMSNETTRV 371
+ G E + C K LCD ++A P S +TRV
Sbjct: 224 DVF---GAGEFLPNNWAMKLAAKDICGGLKIESDLCD----NVCFLIAGPESDQWNSTRV 276
Query: 370 --LFGHFPAGTSLHNMAKYGQAMTNDKFVKFNYGHQKNLELYGTSEPPEYNISAVSPPVV 197
H PAGT+ N+ + Q + + +++G ++N + YG + PPEY+ +A+ +
Sbjct: 277 PVYASHDPAGTATQNIVHWIQMVRHGGVPAYDWGSKENKKKYGQANPPEYDFTAIKGTQI 336
Query: 196 VIY-GENDGLVDTKDV 152
+Y + D L D D+
Sbjct: 337 YLYWSDADWLADKTDI 352
>AL117200-4|CAB60584.1| 401|Caenorhabditis elegans Hypothetical
protein Y50E8A.7 protein.
Length = 401
Score = 62.5 bits (145), Expect = 3e-10
Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 6/208 (2%)
Frame = -2
Query: 718 YVGFSQGAGTFFIMCSERP-NYCEKIKLMIALAPAT---RQTNTKSTMYRRLTQAVQGWE 551
YVG SQG F +E + KI++ AL P + + + QA+ +
Sbjct: 160 YVGHSQGTAVMFARLAEADVTWQSKIRVFFALGPTAGFMKPLMPFTLLEENYLQALIQF- 218
Query: 550 TLLTTAGLHEIFSKGALSQEFVAFFCHFTKFTEGLCDAGLNKFNSVVAHPGSMSNETTRV 371
L G+ + A++ +F A FC +KF LC AG K + + G +++ +
Sbjct: 219 ALDGKFGILPVEIPRAIASKF-ADFCS-SKFFTFLCSAGF-KVAAGIETLGQVNDSRIPI 275
Query: 370 LFGHFPAGTSLHNMAKYGQAMTNDKFVKFNYGHQKNLELYGTSEPPEYNISAVSPPVVVI 191
+ HFP+ TS N+ + Q + + + G +NL YG + P I + ++
Sbjct: 276 ILSHFPSATSTLNLLHWMQIFKYHELRRLDLGTARNLIAYGQKDAPRLEIGNIIAQTILY 335
Query: 190 YGENDGLVDTKDV-EWAMERL-PNVLEA 113
+ ++D + D DV E M+++ P ++E+
Sbjct: 336 FSKDDQITDEVDVREIIMKQMGPGLIES 363
>AF067942-3|AAL11486.1| 351|Caenorhabditis elegans Hypothetical
protein ZK6.7b protein.
Length = 351
Score = 42.7 bits (96), Expect = 3e-04
Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 6/165 (3%)
Frame = -2
Query: 718 YVGFSQGAGTFFIMCSERP-NYCEKIKLMIALAPATRQTNTK---STMYRRLTQAVQGWE 551
Y+G SQG T F S+ ++ +KIK ALAP + K S + GW
Sbjct: 163 YMGHSQGTLTMFSHLSKDDGSFAKKIKKFFALAPIGSVKHIKGFLSFFANYFSLEFDGWF 222
Query: 550 TLLTTAGLHEIFSKGALSQEFVAFFCHFTKFTEGLCDAGLNKFNSVVAHPGSMSNETTRV 371
+ G E + C K LCD L ++A P S TRV
Sbjct: 223 DIF---GAGEFLPNNWAMKLAAKDICGGLKVEADLCDNVL----FLIAGPESDQWNQTRV 275
Query: 370 --LFGHFPAGTSLHNMAKYGQAMTNDKFVKFNYGHQKNLELYGTS 242
H PAGTS N+ + Q + + +++G + N + YG S
Sbjct: 276 PVYATHDPAGTSTQNIVHWMQMVHHGGVPAYDWGTKTNKKKYGQS 320
>Z69637-3|CAA93468.1| 173|Caenorhabditis elegans Hypothetical
protein F35G2.3 protein.
Length = 173
Score = 32.3 bits (70), Expect = 0.36
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Frame = +2
Query: 221 YVILWRLRGSVQF*ILLMSVVELHKFVICHCLSVLCHVVQRCSSREMSKEHSCRFV*HRS 400
+ IL+ L +V +L++ +VE K + L ++C SS EM KEH RS
Sbjct: 4 FPILFGLLYAVTVALLMLQIVE-EKAKAHYQLKLMCE-----SSEEMIKEHQKEMKIERS 57
Query: 401 RVSNDRVKL---------V*AGIAKSLRELSEVTKE 481
++SN +K+ G+ + L+E +EV KE
Sbjct: 58 KISNHLIKIRMHQRDFVAKIGGLQRKLKERNEVIKE 93
>AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical
protein Y71D11A.5 protein.
Length = 508
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -2
Query: 253 YGTSEPPEYNISAVSPPVVVIYGENDGLVDTKDVEWAMERLPNVLEAVLIKDPAWNHMRC 74
Y P +YN+S S + ++ N +++K + PN+ + W + R
Sbjct: 125 YAFMNPCKYNLSLNSVLLEKLWTPNSCFINSKTADIHKSPFPNIFLMIYANGTVWTNYRL 184
Query: 73 YLQ*SCGGD--NFP*D 32
LQ C D FP D
Sbjct: 185 KLQGPCIMDLTKFPFD 200
>Z81132-4|CAB03440.1| 339|Caenorhabditis elegans Hypothetical
protein T26E4.5 protein.
Length = 339
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/79 (30%), Positives = 35/79 (44%)
Frame = -2
Query: 415 VVAHPGSMSNETTRVLFGHFPAGTSLHNMAKYGQAMTNDKFVKFNYGHQKNLELYGTSEP 236
+V H + N TT V+FG N + +A+ D+ FN H ++ T P
Sbjct: 196 LVKHYQKLHNRTTVVVFG---------NDVNFAKAVFEDRI--FNSSHLQDR----TPTP 240
Query: 235 PEYNISAVSPPVVVIYGEN 179
P Y I +SP VI +N
Sbjct: 241 PNYTIPKISPEYSVILPQN 259
>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
protein ZK970.5 protein.
Length = 1143
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 565 VQGWETLLTTAGLHEIFSKGALSQEFVAFFCHFTKFTEGL 446
V W+ + + L +I SKG+ S ++ FC EGL
Sbjct: 636 VSVWK-MCSRGSLQDIISKGSFSMDYFFMFCMIRDIAEGL 674
>Z49937-8|CAD44113.1| 546|Caenorhabditis elegans Hypothetical
protein C33D3.5 protein.
Length = 546
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 391 SNETTRVLFGHFPAGTSLHNM 329
+N+TT + FG+FP G S N+
Sbjct: 38 NNDTTNIHFGNFPLGESFFNI 58
>Z49867-4|CAD44109.1| 546|Caenorhabditis elegans Hypothetical
protein C33D3.5 protein.
Length = 546
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 391 SNETTRVLFGHFPAGTSLHNM 329
+N+TT + FG+FP G S N+
Sbjct: 38 NNDTTNIHFGNFPLGESFFNI 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,934,389
Number of Sequences: 27780
Number of extensions: 364147
Number of successful extensions: 1060
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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