Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16j11
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.72 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.9  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   3.9  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    23   3.9  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    23   3.9  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    23   3.9  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    23   3.9  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    23   3.9  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    23   3.9  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   3.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 478 RRPQTLGLKHPWKKFHVDLPSSTASPNPALLESAFDTSL 594
           RRP+   L+   +  +V LP+ST S +P  L     TSL
Sbjct: 349 RRPKKTRLRWMMEIPNVTLPTSTYSGSPTELPKHLPTSL 387


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 592 TMYRRLTQAVQGWETLLTTAGLHEIF 515
           T Y+  + +V+GWE   T   L+E F
Sbjct: 334 TRYKDSSSSVEGWENRATIPELNEEF 359


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 340 LHNMAKYGQAMTNDKFVKFNYGHQKNLELY 251
           LH +A YG+ +         +G +K +EL+
Sbjct: 249 LHQVAHYGEKVYKCTLCHETFGSKKTMELH 278


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 130 GVFPSPIQHPWCPLIRHSPR 189
           G FPS    PW P+    PR
Sbjct: 130 GNFPSRPMGPWVPMQEQIPR 149


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 130 GVFPSPIQHPWCPLIRHSPR 189
           G FPS    PW P+    PR
Sbjct: 130 GNFPSRPMGPWVPMQEQIPR 149


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 130 GVFPSPIQHPWCPLIRHSPR 189
           G FPS    PW P+    PR
Sbjct: 130 GNFPSRPMGPWVPMQEQIPR 149


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 130 GVFPSPIQHPWCPLIRHSPR 189
           G FPS    PW P+    PR
Sbjct: 130 GNFPSRPMGPWVPMQEQIPR 149


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 130 GVFPSPIQHPWCPLIRHSPR 189
           G FPS    PW P+    PR
Sbjct: 130 GNFPSRPMGPWVPMQEQIPR 149


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 130 GVFPSPIQHPWCPLIRHSPR 189
           G FPS    PW P+    PR
Sbjct: 130 GNFPSRPMGPWVPMQEQIPR 149


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 130 GVFPSPIQHPWCPLIRHSPR 189
           G FPS    PW P+    PR
Sbjct: 130 GNFPSRPMGPWVPMQEQIPR 149


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 130 GVFPSPIQHPWCPLIRHSPR 189
           G FPS    PW P+    PR
Sbjct: 133 GNFPSRPMGPWVPMQEQIPR 152


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 535 PSSTASPNPALLES 576
           PSS+ SP+P+LL S
Sbjct: 38  PSSSRSPSPSLLTS 51


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 86  PHEVLPTVVVWGR 48
           P  VLP + VWGR
Sbjct: 184 PFTVLPLLKVWGR 196


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 154 HPWCPLIRH 180
           HPW PL+R+
Sbjct: 544 HPWLPLLRN 552


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 86  PHEVLPTVVVWGR 48
           P  VLP + VWGR
Sbjct: 184 PFTVLPLLKVWGR 196


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 620 GDETDEYEINDVSKADS 570
           GD+ ++YE ND    D+
Sbjct: 110 GDDNNDYEDNDYGNQDN 126


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 284 ELHKFVICHC 313
           E H F +CHC
Sbjct: 740 EAHCFALCHC 749


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 276 P*LNFTNLSFVIACPY 323
           P LN TN++    CPY
Sbjct: 622 PSLNSTNVTLSTKCPY 637


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 623 SGDETDEYEINDVSKADSS 567
           SGDE+D  E+  V  + SS
Sbjct: 433 SGDESDVVELQPVKSSKSS 451


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -2

Query: 208 PPVVVIYGENDGLVDTKDVE 149
           PPV  +YG ++ ++++ + E
Sbjct: 559 PPVATMYGSDEEIINSSNDE 578


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,433
Number of Sequences: 438
Number of extensions: 4742
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)