Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16j10
         (212 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    30   0.048
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    23   5.5  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    23   5.5  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    23   5.5  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    23   5.5  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    23   7.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    22   9.6  

>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 29.9 bits (64), Expect = 0.048
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -1

Query: 209 ILTSKAYLTSKTDIASLFRARFNREVQVTLTSFVFSSDNLEIVLFLDED 63
           +L S+ Y+T +  +  L     NR  +  +T ++ S++NL++++ L  D
Sbjct: 213 LLKSENYVTKRQSLKLLGEILLNRANRSVMTRYISSAENLKLMMILLRD 261


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +2

Query: 35  NKYFTHKTLHPRQETTRFRGYRRKKQNWLAS 127
           N +  H  ++ +  T  F G  R+  +W+A+
Sbjct: 362 NPFDHHYAIYSKYATPYFHGISRQVHDWIAT 392


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 5   AVKNTLSM*LNKYFTHKTLHPRQETTRFRGYRRKKQN 115
           + +N+L    N+Y TH     RQE   F  +  K ++
Sbjct: 411 SAENSLPASANQYSTHFRYWERQEIPSFAVFENKNRH 447


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 188 LTSKTDIASLFRARFNREVQVTLTSFVFSSDNLEIVL 78
           + S +D+A +F   F+R V+   +S  F S N+ + L
Sbjct: 542 INSSSDLAPIFLEVFSRVVKSVPSSGNFESINVMLAL 578


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 93  PRNRVVS*RGCSVLCVKYLFSYIESV 16
           PR++++    C + C K +FSY+ +V
Sbjct: 268 PRDKII----CLLNCCKVIFSYLRNV 289


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 75  KQHDFEVIGGKNKT 116
           +QH+ E++GG +KT
Sbjct: 36  RQHNGEIVGGASKT 49


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 85  ISRLSEEKTKLVSVT*TSRLKRARNKLAIS 174
           +SR +  KTKL S    +  KR  N+L +S
Sbjct: 629 VSRFAYAKTKLKSTCAKASRKRLFNQLELS 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,830
Number of Sequences: 5004
Number of extensions: 12391
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)