Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16j10
         (212 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1041 - 8174344-8174574                                           27   1.6  
01_05_0217 - 19390788-19391048,19392205-19392438,19393474-193937...    27   2.7  
07_03_1064 + 23700662-23700787,23701709-23701870,23701983-237021...    26   4.8  
02_05_1321 - 35695474-35696161,35696315-35696547                       26   4.8  
02_02_0459 + 10513611-10514015                                         26   4.8  
08_02_1193 + 25125419-25126810                                         25   6.3  

>06_01_1041 - 8174344-8174574
          Length = 76

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 77  TTRFRGYRRKKQNWLASLELR 139
           T R RG RR++  WL SLE R
Sbjct: 4   TARARGARRQRWRWLPSLEQR 24


>01_05_0217 -
           19390788-19391048,19392205-19392438,19393474-19393798,
           19395781-19396121,19396422-19396502,19396640-19396759,
           19397028-19397129,19397811-19397946,19398508-19398654,
           19399024-19399337
          Length = 686

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 41  YFTHKTLHPRQETTRFRGYRRKKQNWLASLELRG*NERGTS 163
           Y TH+ ++   +  +    ++K QNWL   +L+   ER TS
Sbjct: 229 YLTHQVVYNANKLDKMVKEKKKMQNWLDYYQLK--YERNTS 267


>07_03_1064 +
           23700662-23700787,23701709-23701870,23701983-23702101,
           23703128-23703202,23704387-23704480,23704856-23704915,
           23705083-23705151,23705457-23705555,23706201-23706245,
           23706339-23706441,23706665-23706723
          Length = 336

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 209 ILTSKAYLTSKTDIASLFRARFNREVQVTLTSFVFSSDNLEIVLFLDED 63
           +L+S  Y+T +  I  L     +R     +  +V S DNL I++ L  D
Sbjct: 221 LLSSTNYITKRQAIKFLGDMLLDRSNSTVMMRYVSSKDNLMILMNLLRD 269


>02_05_1321 - 35695474-35696161,35696315-35696547
          Length = 306

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 182 SKTDIASLFRARFNREVQVTLTSFVFSSDNL 90
           S  D+A+L R+++ R   VTL    F   NL
Sbjct: 196 SGADLAALIRSKYGRSYDVTLIKKEFMGRNL 226


>02_02_0459 + 10513611-10514015
          Length = 134

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 38  KYFTHKTLHPRQETTRFRGYRRKKQNW 118
           KYF    L    E+ R RG+R K+  W
Sbjct: 102 KYFPESELSVGGESERDRGWRSKRARW 128


>08_02_1193 + 25125419-25126810
          Length = 463

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 74  ETTRFRGYRRKKQNWLASLELRG*NERGTSLQYQF 178
           +TTR RG+  +   WL S + R    RG +  + F
Sbjct: 104 DTTRARGFASRSMIWLPSSDPRWKTLRGVAATHVF 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,697,117
Number of Sequences: 37544
Number of extensions: 68265
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)