Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16j09
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    32   0.075
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    31   0.23 
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    28   1.2  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    27   3.7  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   4.9  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    26   6.5  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   8.6  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 32.3 bits (70), Expect = 0.075
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = -2

Query: 606 RYWAYCEKVFSLWSPNHWWLVS*TTPSAAIYFYIVFSKSCIINNIFLKKRV*FI 445
           R+W   EK   LW P  +WL S     AA  +Y+V S + I   IFL   + FI
Sbjct: 390 RHWINHEKKIDLWRPFSFWLFSIFCTIAA--YYLVSSSTKITVFIFLYLMLTFI 441


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 92  LLLLCVIIFLPFPSHLGSAQHVFSFHTPLSY 184
           L LLC+ +FL F S LG+  H   + + LSY
Sbjct: 408 LFLLCIFVFLCFASSLGALIHRSVYGSALSY 438


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 148 ATCFLLPYSSIIYNFFAHSPLTYISCFTQSI 240
           A CFLLP   IIY  F     T+++ +  ++
Sbjct: 167 AVCFLLPVGVIIYTMFGGIKATFLTDYIHTV 197


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 22  ESVSFLLNLVVYSNS*WRIFFFSTI 96
           E +S +LN+  Y +S WRIF  S +
Sbjct: 136 EEISKILNISKYKSSHWRIFSVSAL 160


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 175 SIIYNFFAHSPLTYISCFTQSIHYCYYGI 261
           +++Y+ F   PL  ISC  QS+   YY +
Sbjct: 522 ALVYSRFQRIPLKQISCLKQSL-VAYYSV 549


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 65  VNGAFFFFPLLLLCVIIFLPFPSHLG 142
           +  AFF F  LL C+ +F   P HLG
Sbjct: 155 IANAFFLFVTLLQCIPLFC--PEHLG 178


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 504 LYKNRLPLMALST-TQATSG*DSRVKKPSRNTPSIEDNCRRYQ 629
           LYK  L  +AL+  ++ +   D+RV     +T SI++N  +YQ
Sbjct: 204 LYKLSLSRLALAVHSRMSQSKDARVSGCLVDTSSIQENAEKYQ 246


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 77  FFFFPLLLLCVIIFLPFPSHLGSAQHVFSFHTPLSYTISSLTHLLHT 217
           FF   +L LC+     F  ++    ++ +F T L Y + +L +  +T
Sbjct: 145 FFLGQVLSLCITATNTFNGYMSGISNIPAFQTFLVYALLTLVYTPYT 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,328
Number of Sequences: 5004
Number of extensions: 67761
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)