Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16j09
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0179 + 18161696-18163361,18163552-18163664                       29   3.9  
08_01_1070 + 10932102-10932291,10936686-10936947,10937158-109372...    28   6.8  
01_07_0040 + 40672633-40673369,40673412-40673558,40675019-406752...    28   9.0  
01_06_0894 - 32781957-32782287,32783019-32783284,32783771-327840...    28   9.0  

>03_04_0179 + 18161696-18163361,18163552-18163664
          Length = 592

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = -2

Query: 273 IMIWNTIVAIM--DGLRETRYVCKR*V-SEEIVYDR-GVWKEKTCCADPR*LGKGRKMMT 106
           I+ WN+++++   DG R   + C R + S  + +D   +    + C D     KG +++T
Sbjct: 203 IVSWNSVMSVYRDDGQRRQVFECFRMIRSHGLFFDECSLSTVLSACIDAEDSSKGDQLLT 262

Query: 105 HSSNSGKKKNA 73
           H    G  +N+
Sbjct: 263 HCVKMGLLRNS 273


>08_01_1070 +
           10932102-10932291,10936686-10936947,10937158-10937292,
           10937468-10938791
          Length = 636

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 68  NGAFFFFPLLLLCVIIF-LPFPSHLGSAQHVFSFHTP 175
           +G F   PL  + +I   L FPS   +A  + SFHTP
Sbjct: 108 SGLFIIVPLRKMMIIRHRLTFPSGTATAHLINSFHTP 144


>01_07_0040 +
           40672633-40673369,40673412-40673558,40675019-40675223,
           40676730-40676816
          Length = 391

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -3

Query: 611 ILDTGRIARRFFHSGVLTTGGLCRRQRHQRQS 516
           +L TGR     F SG    GGL R  RH +QS
Sbjct: 311 VLLTGRDPTDHFFSGETGRGGLARWLRHMQQS 342


>01_06_0894 -
           32781957-32782287,32783019-32783284,32783771-32784040,
           32785007-32785134,32785284-32785893
          Length = 534

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 521 AADGVVYDTSHQWLGLQSEKTFSQYAQYRG 610
           AA GVV D SH W    +E+T   Y+   G
Sbjct: 106 AAGGVVVDMSHGWRAEAAERTLPVYSPALG 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,062,040
Number of Sequences: 37544
Number of extensions: 386284
Number of successful extensions: 779
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)