Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16j09
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF039042-7|AAC48250.1|  336|Caenorhabditis elegans Seven tm rece...    29   2.6  
Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical
           protein F14H8.6 protein.
          Length = 695

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = +2

Query: 74  AFFFFPLLLLCVIIFLPFPSHLGSAQHVFSFHTPLSYTISSLTHLLHTYRVSRNPSIIAT 253
           AF  F L+ +CV+IF     H     + F      +YT + L H + +Y    NP I+AT
Sbjct: 243 AFGLFKLIFICVVIF-----HWNGCLY-FYISKVYNYTTARLEHWIFSYDKIINP-ILAT 295

Query: 254 MVFHI 268
            V  I
Sbjct: 296 CVTDI 300


>AF039042-7|AAC48250.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 160 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 86  FPLLLLCVIIFLPF---PSHLGSAQHVFSFHTPLSYTISSLTHLLHTYRVSRNPSIIATM 256
           F LL  CVII L F   PS +GS +++  + + LS  ++ L  L+  Y  S     +  M
Sbjct: 18  FSLLTNCVIIVLIFSSSPSKMGSYKYLLCYFSMLSSFVAFLDLLISPYVYSFGSCAVTIM 77


>Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical
           protein F17C8.1 protein.
          Length = 1253

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +2

Query: 80  FFFPLLLLCVIIFLPFPSHLGSAQHVFSFHTPLSYTISSLTHLLHTYRVSRNPSIIATMV 259
           F+ P   LC  +       + SA++  +F TP++   +S   +L  Y V   P  +  ++
Sbjct: 121 FYMPTSFLCTFLICLVTLLIFSAENQAAFMTPVASLATSFQVVLLIYTVIPLPLYLCILI 180

Query: 260 FHIIIVL*QHLN 295
             I  +L + LN
Sbjct: 181 GIIYSILFEILN 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,116,742
Number of Sequences: 27780
Number of extensions: 368916
Number of successful extensions: 821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)