Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16j09
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   4.0  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   7.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   7.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   7.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.2  

>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 76  IFFFSTIATMCHHFP--ALPQSPRVGATCF 159
           IF F+ +AT+C  F    LP  P+ G   F
Sbjct: 5   IFIFALLATICAAFAYVPLPNVPQPGRRPF 34


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 83  FFPLLLLCVIIFLPFPSHLGSAQHVFSFHTPLSYTISSLTHLLHT 217
           + P  L+ VI+  PF      +  +  F T L Y  S+L  L++T
Sbjct: 340 WLPFFLMYVIV--PFCPDCCPSDRMVYFITWLGYVNSALNPLIYT 382


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 83  FFPLLLLCVIIFLPFPSHLGSAQHVFSFHTPLSYTISSLTHLLHT 217
           + P  L+ VI+  PF      +  +  F T L Y  S+L  L++T
Sbjct: 340 WLPFFLMYVIV--PFCPDCCPSDRMVYFITWLGYVNSALNPLIYT 382


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 83  FFPLLLLCVIIFLPFPSHLGSAQHVFSFHTPLSYTISSLTHLLHT 217
           + P  L+ VI+  PF      +  +  F T L Y  S+L  L++T
Sbjct: 340 WLPFFLMYVIV--PFCPDCCPSDRMVYFITWLGYVNSALNPLIYT 382


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/35 (20%), Positives = 17/35 (48%)
 Frame = +2

Query: 110 IIFLPFPSHLGSAQHVFSFHTPLSYTISSLTHLLH 214
           I+F+P P+    A+ ++      +Y   ++  + H
Sbjct: 775 ILFMPIPNRYREAKQIYKVGNVQAYIDGNVVFVCH 809


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 403 LGAAKSVYPLFCPFSVWKGSK 341
           L    +V  + C F +WKG K
Sbjct: 209 LAGTLAVVWIMCYFCIWKGVK 229


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 403 LGAAKSVYPLFCPFSVWKGSK 341
           L    +V  + C F +WKG K
Sbjct: 262 LAGTLAVVWIMCYFCIWKGVK 282


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 86  FPLLLLCVIIFLPFPSHLGSAQHVFSFHTPLSYTIS 193
           F +   CVI     P + G+  +V    T +S TIS
Sbjct: 852 FTMYTTCVIWLAFVPLYFGTGNNVALRITSMSVTIS 887


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,873
Number of Sequences: 438
Number of extensions: 4796
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)