Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16j08
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    28   1.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   3.7  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   4.9  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    26   4.9  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    26   6.5  
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    26   6.5  

>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 239 DEKSRVFIVKNEQNIEYLKANKYYAFHSDSVDNFEFENDS 120
           D+ S+VF +  +Q I  L       +HS SV    F NDS
Sbjct: 201 DQTSKVFDLSTQQCITRLGRRGVDGYHSHSVKQVNFCNDS 240


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
          Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 1  WTLWQKSQPILVVFFLH 51
          WT+W KS  I+V+ F H
Sbjct: 47 WTIWLKSLVIMVLLFTH 63


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 32/153 (20%), Positives = 70/153 (45%), Gaps = 6/153 (3%)
 Frame = -2

Query: 566 LNNKKIRNYYLKKICILLN-----LNFKHVIESSFDKNHIVAKLCDATRAKEWQTMSRER 402
           +N +  + Y L+K  ILL+     +NFKH++     ++H++        ++E    S + 
Sbjct: 1   MNFRPEQQYILEKPGILLSFEQLRINFKHILRHLEHESHVINSTLTTLISQE--NASMDE 58

Query: 401 RLKNFNLNINYDGPVKIFVAATAE-QKLLLKKTRDALLPFYKYISICKNGVMVRRDEKSR 225
           +++  +  ++    VK  +    + + L +K+T+  LL F   +   ++       + SR
Sbjct: 59  KIEKIDSLLSRVSTVKKKMKHLHDCEALFIKQTKSRLL-FMNRLQGIRDMESADFLDWSR 117

Query: 224 VFIVKNEQNIEYLKANKYYAFHSDSVDNFEFEN 126
           V +  N    +Y+ AN Y+   +    + + EN
Sbjct: 118 VRL--NRLVADYMMANGYHGAAALLCKDSQLEN 148


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 110 AFFCYRFQTQNYQRYRY 160
           +FFC+R Q Q+  +YRY
Sbjct: 155 SFFCFRRQIQHMLKYRY 171


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 326 KLLLKKTRDALLPFYK-YISICKNGVMVRRDEKSRVFIVKNEQNIEYLKAN 177
           K+++   +D L+ FY  +   CK  +    +   +VF  KNE N+E +K N
Sbjct: 152 KVVMDDKKDVLVEFYADWCGYCKR-LAPTYETLGKVF--KNEPNVEIVKIN 199


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -2

Query: 248 VRRDEKSRVFIVKNEQNIEYLKANKYYAFHSDSVDNFEFENDSKKMLQN 102
           +RR+   +  +  + Q    L  NK   F S    NF F N S K   N
Sbjct: 171 LRRNTSKKSSLSDSSQKENTLTLNKENEFSSKDDSNFAFHNSSTKTTIN 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,539
Number of Sequences: 5004
Number of extensions: 44669
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)