Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16j08
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152...    29   3.9  
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176           28   9.0  

>03_05_0954 -
           29113938-29114024,29114277-29114444,29115156-29115212,
           29115314-29115369,29115463-29115572,29116142-29116310,
           29116418-29116742,29117378-29117442,29117541-29117712,
           29118191-29118484
          Length = 500

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 620 ECDNLTDSVEIYGIHDNRLN-NKKIRNYYLKKICILLNLNFKHVI 489
           +CD    SV +YG  D+ L  N K+ N  + K C  + + FKHV+
Sbjct: 358 DCD-ARQSVYVYGCKDSVLQVNGKVNNITVDK-CTKVGIVFKHVV 400


>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
          Length = 427

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 674 DENVSDNIKSMSEKLKRXECDNLTDSVEIYGIHDNRLNNKKIRNY 540
           D N ++N  S +  +   E D   D V     +DNR+ N + R Y
Sbjct: 195 DNNDNNNSNSSNNGMYFGEVDEYFDLVGYNSYYDNRIENNQDRQY 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,691,017
Number of Sequences: 37544
Number of extensions: 237584
Number of successful extensions: 544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)