Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16j08
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical p...    30   2.0  
Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF016417-3|AAB65281.1|  457|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical
           protein C56C10.1 protein.
          Length = 617

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
 Frame = -2

Query: 599 SVEIYGIHDNRLNN---KKIRNYYLKKICILLNLNFKHVIESSFDKNHIVAKLCDATRAK 429
           S+++ G+ D+  N      ++ Y  + +  L NL    VI   + + HI      + RA+
Sbjct: 421 SLKLDGVPDDTYNEFVEMYLQKYGYEHMFELQNLRNSRVI---YARRHIAHDRTISERAR 477

Query: 428 EWQTMSRERRLKNFNLNINYDGPVKI-FVAATAEQKLLLKKTRDAL 294
            W+T++R+ R+   N  ++   P  + +V       LL K   D +
Sbjct: 478 TWETLARKFRIVKGNEPMDMSNPSDMSYVFGARISPLLCKIVEDTI 523


>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 491 IESSFDKNHIVAKLCDATRAKEWQTMS 411
           +ES++DK H + + C  T + +W T +
Sbjct: 131 VESAWDKTHQLFECCGVTNSSDWLTFT 157


>AF016417-3|AAB65281.1|  457|Caenorhabditis elegans Hypothetical
           protein F17A9.4 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 617 CDNLTDSVEIYGIHDNRLNNKKIRNYYLK 531
           CDNLT S +I G   N  N K  +N +LK
Sbjct: 7   CDNLTVSSKILGEQLNFRNGKTAQNRFLK 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,081
Number of Sequences: 27780
Number of extensions: 253006
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)