Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16i23
         (719 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC053530-1|AAH53530.1|  350|Homo sapiens retinitis pigmentosa 2 ...    33   0.78 
BC043348-1|AAH43348.1|  350|Homo sapiens retinitis pigmentosa 2 ...    33   0.78 
AL627143-2|CAH70614.1|  350|Homo sapiens retinitis pigmentosa 2 ...    33   0.78 
AL050307-1|CAB82030.2|  350|Homo sapiens retinitis pigmentosa 2 ...    33   0.78 
AJ007590-1|CAA07577.1|  350|Homo sapiens XRP2 protein protein.         33   0.78 

>BC053530-1|AAH53530.1|  350|Homo sapiens retinitis pigmentosa 2
           (X-linked recessive) protein.
          Length = 350

 Score = 33.5 bits (73), Expect = 0.78
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 575 ENFNIYI-THMTNRNK*ICRNIYIFSVIVFLLPLKGILLFRVVTECKCT 432
           EN NIYI  H        C N      I+FL P+KG + FR   +CKCT
Sbjct: 68  ENCNIYIFDHSATVTIDDCTNC-----IIFLGPVKGSVFFRNCRDCKCT 111


>BC043348-1|AAH43348.1|  350|Homo sapiens retinitis pigmentosa 2
           (X-linked recessive) protein.
          Length = 350

 Score = 33.5 bits (73), Expect = 0.78
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 575 ENFNIYI-THMTNRNK*ICRNIYIFSVIVFLLPLKGILLFRVVTECKCT 432
           EN NIYI  H        C N      I+FL P+KG + FR   +CKCT
Sbjct: 68  ENCNIYIFDHSATVTIDDCTNC-----IIFLGPVKGSVFFRNCRDCKCT 111


>AL627143-2|CAH70614.1|  350|Homo sapiens retinitis pigmentosa 2
           (X-linked recessive) protein.
          Length = 350

 Score = 33.5 bits (73), Expect = 0.78
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 575 ENFNIYI-THMTNRNK*ICRNIYIFSVIVFLLPLKGILLFRVVTECKCT 432
           EN NIYI  H        C N      I+FL P+KG + FR   +CKCT
Sbjct: 68  ENCNIYIFDHSATVTIDDCTNC-----IIFLGPVKGSVFFRNCRDCKCT 111


>AL050307-1|CAB82030.2|  350|Homo sapiens retinitis pigmentosa 2
           (X-linked recessive) protein.
          Length = 350

 Score = 33.5 bits (73), Expect = 0.78
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 575 ENFNIYI-THMTNRNK*ICRNIYIFSVIVFLLPLKGILLFRVVTECKCT 432
           EN NIYI  H        C N      I+FL P+KG + FR   +CKCT
Sbjct: 68  ENCNIYIFDHSATVTIDDCTNC-----IIFLGPVKGSVFFRNCRDCKCT 111


>AJ007590-1|CAA07577.1|  350|Homo sapiens XRP2 protein protein.
          Length = 350

 Score = 33.5 bits (73), Expect = 0.78
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 575 ENFNIYI-THMTNRNK*ICRNIYIFSVIVFLLPLKGILLFRVVTECKCT 432
           EN NIYI  H        C N      I+FL P+KG + FR   +CKCT
Sbjct: 68  ENCNIYIFDHSATVTIDDCTNC-----IIFLGPVKGSVFFRNCRDCKCT 111


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,772,798
Number of Sequences: 237096
Number of extensions: 1221870
Number of successful extensions: 1192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)