Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16i21
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 107 1e-24
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 57 2e-09
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 54 3e-08
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 2e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.014
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.014
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.31
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.40
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.71
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 2.2
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 3.8
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 3.8
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 6.6
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 6.6
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 25 8.7
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 8.7
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 8.7
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 8.7
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 107 bits (258), Expect = 1e-24
Identities = 55/145 (37%), Positives = 74/145 (51%), Gaps = 13/145 (8%)
Frame = -1
Query: 722 TGPGIFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNGTGHI 549
T PG C + G +R+ + C+ CN+TGH A +C E + CY C GH+
Sbjct: 13 TRPGPRCYNCGENGHQAREC---TKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHL 69
Query: 548 ARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES--------ATQTCYNCNKSGHISR 402
R+C SP+ CY C + GHIAR+C G++S + CY C GH +R
Sbjct: 70 VRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQAR 129
Query: 401 NCPDGTKTCYVCGKPGHISRECDEA 327
+C G K CY CGK GH S EC +A
Sbjct: 130 DCTMGVK-CYSCGKIGHRSFECQQA 153
Score = 86.2 bits (204), Expect = 4e-18
Identities = 46/144 (31%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Frame = -1
Query: 713 GIFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC-----KEEADRCYRCNGTGHI 549
G C Q G + + +Q + C+ C GH RDC + CY+C GHI
Sbjct: 35 GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHI 94
Query: 548 ARECAQSPDEP-----------SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 402
AR+C + + +CY C GH AR+C G + CY+C K GH S
Sbjct: 95 ARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK------CYSCGKIGHRSF 148
Query: 401 NCPDGT--KTCYVCGKPGHISREC 336
C + + CY C +PGHI+ C
Sbjct: 149 ECQQASDGQLCYKCNQPGHIAVNC 172
Score = 74.1 bits (174), Expect = 2e-14
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = -1
Query: 518 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHIS 345
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 344 RECDEARN 321
R+C + N
Sbjct: 71 RDCPSSPN 78
Score = 23.4 bits (48), Expect(2) = 3.3
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 741 SVXYKCNRTGH 709
S+ Y CN+TGH
Sbjct: 36 SICYNCNQTGH 46
Score = 21.8 bits (44), Expect(2) = 3.3
Identities = 8/22 (36%), Positives = 9/22 (40%)
Frame = -3
Query: 732 YKCNRTGHFRARMHAGGRGVAG 667
YKC R GH G+ G
Sbjct: 86 YKCGRVGHIARDCRTNGQQSGG 107
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 57.2 bits (132), Expect = 2e-09
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = -1
Query: 653 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 492
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 491 GHIARNCPEG--GRESATQTCYNCNKSGHISRNCPDGTK 381
GH++ C + G C C+ H++++C K
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = -1
Query: 545 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC----PDGTKT 378
R Q + C+ C + GHI ++CPE + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 377 CYVCGKPGHISRECDE 330
C++C + GH+S +C++
Sbjct: 126 CFICHENGHLSGQCEQ 141
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Frame = -1
Query: 707 FARECTQGGVVSRDSGFNRQREK-CFKCNRTGHFARDCKEEAD----RCYRCNGTGHIAR 543
F C Q G + +D + CF+C H C ++ +C+ C+ GH++
Sbjct: 78 FCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSG 137
Query: 542 ECAQSPDE--PS---CYNCNKTGHIARNCPEGGRESAT 444
+C Q+P P C C+ H+A++C + ++ +
Sbjct: 138 QCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
Score = 28.7 bits (61), Expect = 0.94
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 383 KTCYVCGKPGHISRECDEARN 321
K C+ C + GHI ++C EA++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 53.6 bits (123), Expect = 3e-08
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = -1
Query: 638 CFKCNRTGHFARDCKEEADRCYRCNG-TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG 462
C C GH ++DC C C HI+ C P C NC GHIA C E
Sbjct: 89 CHNCKGNGHISKDCPHVL--CTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARCSE- 142
Query: 461 GRESATQTCYNCNKSGHISRNCP 393
R+ + C C+ H S CP
Sbjct: 143 PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 50.4 bits (115), Expect = 3e-07
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -1
Query: 512 CYNCNKTGHIARNCPEGGRESATQTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHISREC 336
C+NC GHI+++CP C C HIS CP TK C CG GHI+ C
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARC 140
Query: 335 DEAR 324
E R
Sbjct: 141 SEPR 144
Score = 49.6 bits (113), Expect = 5e-07
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Frame = -1
Query: 626 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNK-TGHIARNCPEGGRES 450
+R +F D E+ C+ C G GHI+++C C C HI+ CP
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDC----PHVLCTTCGAIDDHISVRCP------ 122
Query: 449 ATQTCYNCNKSGHISRNCPD----GTKTCYVCGKPGHISREC 336
T+ C NC GHI+ C + G + C C H S C
Sbjct: 123 WTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164
Score = 31.5 bits (68), Expect = 0.13
Identities = 29/129 (22%), Positives = 42/129 (32%), Gaps = 16/129 (12%)
Frame = -1
Query: 710 IFARECTQGGVVSRDSGFNRQREKCFKCNRTG-HFARDCKEEADRCYRCNGTGHIARECA 534
I C G +S+D C C H + C +C C GHIA C+
Sbjct: 87 IVCHNCKGNGHISKDC----PHVLCTTCGAIDDHISVRCPW-TKKCMNCGLLGHIAARCS 141
Query: 533 QSPDEPS--CYNCNKTGHIARNCPEGGR-------------ESATQTCYNCNKSGHISRN 399
+ C C+ H + CP R + CYNC H +
Sbjct: 142 EPRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASDEHFGDD 201
Query: 398 CPDGTKTCY 372
C +++ Y
Sbjct: 202 CTLPSRSNY 210
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 512 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 393
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = -1
Query: 458 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEARN*PQPP 306
R+ Q C NC GH +CP+ C CG GHI+R+C R+ QPP
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC-PVRD-QQPP 357
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = -1
Query: 650 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 516
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.014
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 413 HISRNCPDGTKTCYVCGKPGHISREC 336
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -1
Query: 614 HFARDCKEEADRCYRCNGTGHIAREC 537
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.014
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 413 HISRNCPDGTKTCYVCGKPGHISREC 336
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -1
Query: 614 HFARDCKEEADRCYRCNGTGHIAREC 537
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.31
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = -1
Query: 476 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 366
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.40
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 533 QSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN-KSGHISRNCPDGTKTCYVCG 363
++ ++P+ N + N + T TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.71
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 461 GRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 357
GR+ T+ C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 533 QSPDEPSCYNCNKTGHIARN--CPEGGR 456
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 656 NRQREKCFKCNRTGHFARDCKEEA 585
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = -1
Query: 638 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 513
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = -1
Query: 545 RECAQSPDEPS-----CYNCNKTGHIARNCP 468
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 437 CYNCNKSGHISRNCPDGTKTCYVCGKP 357
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +2
Query: 428 SYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA-----PCRYICSNGQPL 592
S S ++S TP P SS+ P+ S TTA+ ++ LC Y C N Q
Sbjct: 843 SSSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGMQ---LCGSNYYDASSYYCDNDQLC 899
Query: 593 P 595
P
Sbjct: 900 P 900
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 152 YKSTVEPHSSVCGADAALHLYCNRLSCVARGVL 250
Y +T EP ++ GA+ L + R +A+G+L
Sbjct: 50 YDNTWEPEQNLFGAEKVLKKWKKRKKLIAKGLL 82
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 113 KNKHERASTRPSIYKSTVEPHSS 181
K+KH S+ YK+ VEPH S
Sbjct: 16 KSKHASKSSLKEKYKNEVEPHRS 38
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 646 VRSASSATAQDTLRGIARKRLTVA 575
VRSA S+ Q T R +A+ +TVA
Sbjct: 50 VRSARSSMEQPTFRPVAKNSVTVA 73
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 464 GGRESATQTCYNCNKSG 414
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 395 PDGTKTCYVCGKPGHISRECDEARN 321
PDGT YV +PG IS +A N
Sbjct: 64 PDGTTMVYVFPRPGTISPWSSKATN 88
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 428 SYSRSASQTPAPPRDSSVRCGPSCCSCN 511
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,604
Number of Sequences: 5004
Number of extensions: 52546
Number of successful extensions: 241
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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