Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16i19
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    30   0.26 
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    27   3.2  
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo...    26   4.2  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   7.4  

>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 185 SGDLRRVAPAVNLLRERFESLQHRGALAASRVMMKKKRKLKSYFKPGHKVTDQDVQK 15
           +  LR + P  NL  +R+ SLQ R  +  S  ++KK  K ++  K  +   D  +QK
Sbjct: 361 TSSLRELKPEGNLFADRYLSLQQRAMVPPSLPVLKKS-KYRAKIKEKYSHKDFHLQK 416


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -1

Query: 656 HEQKXXXKEQHLDRVTTKMFKKVTAXEKE-NQWXEEMSEGLPKPHNPAEHXSESDGE 489
           +EQ    K+Q  +  TT+        ++  N     +S+GL     PA H  E DGE
Sbjct: 248 NEQVNDEKKQSSEEDTTENNSAAEVIDETVNDLESAVSKGLQIETQPASHDGEVDGE 304


>SPBC1105.18c ||SPBC887.21c|peptide release
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = -1

Query: 146 LRERFESLQHRG----ALAASRVMMKKK-RKLKSYFKPGHKVTDQD 24
           L E+ +  +H      A    R++ KKK R+ KS  K G+K+ DQD
Sbjct: 104 LTEKVDEFKHGNDSLLARKVQRIVKKKKQREKKSKRKYGNKIDDQD 149


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 474 VDXFVLSVGLGXMFCWVMWFRQTFTHLFTPLIFFF 578
           +  F+    LG  +CWV W       +   +IFFF
Sbjct: 243 IGDFICQSYLG--WCWVFWINMIMGAVVIVIIFFF 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,766
Number of Sequences: 5004
Number of extensions: 25575
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)