Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16i19
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0737 - 13529180-13529543,13530661-13531178                       32   0.36 
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767...    30   1.4  
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818           29   3.3  
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924...    29   3.3  

>02_02_0737 - 13529180-13529543,13530661-13531178
          Length = 293

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +2

Query: 308 EPSRPS*SKTPVSEACKYQLSSFCQSFPFSGVPFPTVSPSVSFXPCD 448
           +P R   S  P S +C++Q ++   S P S +P PT S S S  P D
Sbjct: 92  QPPRRHRSTAPSSSSCQFQAAA--PSRPPSALPSPTASSSTSSPPVD 136


>03_03_0008 -
           13674602-13674708,13675272-13675439,13676169-13676787,
           13676868-13677330,13677855-13678036,13678093-13678235,
           13678315-13678423,13679000-13679456,13680490-13682473,
           13682507-13682626,13682920-13682971
          Length = 1467

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 176 LRRVAPAVNLLRERFESLQHRGALAASRVMMKKKRKLKSYFKPGHKVTDQD 24
           L+ V P V  L     SL   G +++S +   KK++  S    GH   D D
Sbjct: 55  LKEVKPGVEKLANNNSSLDTEGLVSSSNMGSDKKQEDHSIVASGHNTADSD 105


>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
          Length = 743

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 142 ANVSSRSNTAAPSQPPGS**RRNGN*RATSSRDTRSPTKTYR 17
           A  S  SNT+ P Q      + + N   T + DTRSPT+ YR
Sbjct: 697 AETSVTSNTSQPEQDVNDPDQSSNN---TGAGDTRSPTRIYR 735


>04_04_0350 + 24591002-24591123,24592020-24592091,24592343-24592448,
            24593138-24593242,24593693-24593815,24594163-24594630,
            24595226-24595351,24595430-24595516,24595615-24595701,
            24595807-24595903,24596519-24596636,24596923-24596995,
            24597504-24597566,24597666-24597832,24598444-24598631,
            24598909-24599057,24599193-24599442,24599597-24599855,
            24599977-24600073,24606696-24606776,24606914-24606970,
            24607264-24607395,24607476-24607562,24607941-24608049,
            24608134-24608270,24608841-24608945,24609566-24609654,
            24609757-24609859,24609960-24610064,24610282-24610293,
            24611013-24611078
          Length = 1279

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 329  SKTPVSEACKYQLSSFCQSFPFSGVPFPTVSPSVSFXPC 445
            SK P +      L  F  + P S + FP + PS+S   C
Sbjct: 1157 SKPPGAVGVSIALEKFLPNSPSSDIGFPRIEPSISVLVC 1195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,261,276
Number of Sequences: 37544
Number of extensions: 187401
Number of successful extensions: 610
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)