Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16i19
         (665 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014009-1|AAH14009.2|  476|Homo sapiens GLTSCR2 protein protein.      32   2.1  
BC010095-1|AAH10095.1|  478|Homo sapiens glioma tumor suppressor...    32   2.1  
BC007248-1|AAH07248.1|  474|Homo sapiens glioma tumor suppressor...    32   2.1  
BC006311-1|AAH06311.1|  478|Homo sapiens glioma tumor suppressor...    32   2.1  
BC004229-1|AAH04229.2|  472|Homo sapiens GLTSCR2 protein protein.      32   2.1  
AY535000-1|AAS46028.1|  478|Homo sapiens preS1 binding protein p...    32   2.1  
AL359336-1|CAB94787.1|  467|Homo sapiens  GLTSCR2, glioma tumor ...    32   2.1  
AL359335-1|CAB94786.1|  459|Homo sapiens  GLTSCR2, glioma tumor ...    32   2.1  
AF182076-1|AAF62873.1|  478|Homo sapiens glioma tumor suppressor...    32   2.1  
BC066979-1|AAH66979.1|  626|Homo sapiens T-cell lymphoma invasio...    30   8.5  
BC022481-1|AAH22481.1|  382|Homo sapiens neurogenic differentiat...    30   8.5  

>BC014009-1|AAH14009.2|  476|Homo sapiens GLTSCR2 protein protein.
          Length = 476

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 176 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 63
           LR + P  N+LR+RF+S Q R  +    R   K+K K+K
Sbjct: 426 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 464


>BC010095-1|AAH10095.1|  478|Homo sapiens glioma tumor suppressor
           candidate region gene 2 protein.
          Length = 478

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 176 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 63
           LR + P  N+LR+RF+S Q R  +    R   K+K K+K
Sbjct: 428 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 466


>BC007248-1|AAH07248.1|  474|Homo sapiens glioma tumor suppressor
           candidate region gene 2 protein.
          Length = 474

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 176 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 63
           LR + P  N+LR+RF+S Q R  +    R   K+K K+K
Sbjct: 424 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 462


>BC006311-1|AAH06311.1|  478|Homo sapiens glioma tumor suppressor
           candidate region gene 2 protein.
          Length = 478

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 176 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 63
           LR + P  N+LR+RF+S Q R  +    R   K+K K+K
Sbjct: 428 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 466


>BC004229-1|AAH04229.2|  472|Homo sapiens GLTSCR2 protein protein.
          Length = 472

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 176 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 63
           LR + P  N+LR+RF+S Q R  +    R   K+K K+K
Sbjct: 422 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 460


>AY535000-1|AAS46028.1|  478|Homo sapiens preS1 binding protein
           protein.
          Length = 478

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 176 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 63
           LR + P  N+LR+RF+S Q R  +    R   K+K K+K
Sbjct: 428 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 466


>AL359336-1|CAB94787.1|  467|Homo sapiens  GLTSCR2, glioma tumor
           suppressor candidate region protein 2 (AF182076_1)
           protein.
          Length = 467

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 176 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 63
           LR + P  N+LR+RF+S Q R  +    R   K+K K+K
Sbjct: 417 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 455


>AL359335-1|CAB94786.1|  459|Homo sapiens  GLTSCR2, glioma tumor
           suppressor candidate region protein 2 (AF182076_1)
           protein.
          Length = 459

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 176 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 63
           LR + P  N+LR+RF+S Q R  +    R   K+K K+K
Sbjct: 409 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 447


>AF182076-1|AAF62873.1|  478|Homo sapiens glioma tumor suppressor
           candidate region protein 2 protein.
          Length = 478

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 176 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 63
           LR + P  N+LR+RF+S Q R  +    R   K+K K+K
Sbjct: 428 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 466


>BC066979-1|AAH66979.1|  626|Homo sapiens T-cell lymphoma invasion
           and metastasis 2 protein.
          Length = 626

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 116 RGALAASRVMMKKKRKLKSYFKPGHKVTDQDVQKF 12
           R  +   +   K K+KL SY +P H  TD D  KF
Sbjct: 282 RAVILVYKENCKLKKKLPSYSRPAHNSTDLDPFKF 316


>BC022481-1|AAH22481.1|  382|Homo sapiens neurogenic differentiation
           2 protein.
          Length = 382

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 462 EQEERSQGXKETEGETVGKGTPEKGK 385
           E+EE  +G  E EGE   KG P+K K
Sbjct: 85  EEEEEEEGLDEAEGERPKKGGPKKRK 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,474,672
Number of Sequences: 237096
Number of extensions: 1021082
Number of successful extensions: 4334
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4329
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)