Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16i19
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z48009-2|CAA88077.1|  230|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z92786-7|CAB07209.1|  145|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF440508-1|AAL34096.1|  144|Caenorhabditis elegans SKR-5 protein.      28   6.8  
AF016674-7|AAB66126.2|  415|Caenorhabditis elegans C-type lectin...    27   9.1  

>Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical
           protein T07D10.4 protein.
          Length = 413

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 335 TPVSEACKYQLSSFCQSFPFSGVPFPT 415
           T ++++CKY  + +C +F  +  PF T
Sbjct: 155 TTIADSCKYNYNGYCYTFSTADAPFST 181


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical
           protein M03A8.2 protein.
          Length = 2275

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 123 PTPRRPRSLQGHDEEETEIKELLQAGTQ 40
           P  + PRS   HD EETE  E++QAGT+
Sbjct: 849 PFSKVPRSYCSHDGEETE--EIIQAGTR 874


>AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical
           protein H16D19.1 protein.
          Length = 413

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 335 TPVSEACKYQLSSFCQSFPFSGVPFPT 415
           T ++++CKY  + +C +F  +  PF T
Sbjct: 155 TTIADSCKYNYNGYCYTFSTADAPFST 181


>Z48009-2|CAA88077.1|  230|Caenorhabditis elegans Hypothetical
           protein AH6.3 protein.
          Length = 230

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 653 EQKXXXKEQ-HLDRVTTKMFKKVTAXEKENQWXEEMSEGLPKPHNPAEHXSESD 495
           E+K   KE+  +++  TK  +K    EK  +  +   E +PK H P+    E D
Sbjct: 133 EEKPDAKEKKEIEKEKTKEKEKTKEKEKTQEKEKSKDETVPKQHAPSLKRQEGD 186


>Z92786-7|CAB07209.1|  145|Caenorhabditis elegans Hypothetical
           protein F47H4.10 protein.
          Length = 145

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 623 LDRVTTKMFKKVTAXEKENQWXEEMSEGLPK-PHNPAEHXSESDGEY 486
           L  VT+++FKKV       +W E  +E +PK P N  E  ++  GE+
Sbjct: 45  LKNVTSEIFKKVI------EWCEYHAEDIPKPPDNVEEKRTDDIGEW 85


>AF440508-1|AAL34096.1|  144|Caenorhabditis elegans SKR-5 protein.
          Length = 144

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 623 LDRVTTKMFKKVTAXEKENQWXEEMSEGLPK-PHNPAEHXSESDGEY 486
           L  VT+++FKKV       +W E  +E +PK P N  E  ++  GE+
Sbjct: 44  LKNVTSEIFKKVI------EWCEYHAEDIPKPPDNVEEKRTDDIGEW 84


>AF016674-7|AAB66126.2|  415|Caenorhabditis elegans C-type lectin
           protein 10 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 335 TPVSEACKYQLSSFCQSFPFSGVPFPT 415
           T   ++C Y  + +C +F  + VPF T
Sbjct: 153 TTYQDSCSYNYNGYCYTFSSTAVPFVT 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,051,959
Number of Sequences: 27780
Number of extensions: 154771
Number of successful extensions: 528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)