Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16i18
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    29   0.17 
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    27   0.90 
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   4.8  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    24   6.3  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    24   8.3  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    24   8.3  

>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 29.5 bits (63), Expect = 0.17
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +1

Query: 133 NQHSPCNINTNYYSSLHFTQHPDLLTLYN*INTLSISFTSSVNEGFN 273
           N      +NT   SSL  T HPD+L + + I  L  S  S V E  N
Sbjct: 853 NHSKDRKLNTLALSSLLRTNHPDVLAVLDSIMNLWFSVLSEVEEDAN 899


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 0.90
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 151 NINTNYYSSLHFTQHPDLLTLYN*INTLSISFTSSVNEGF 270
           NIN N + S+H T      TL   +N L+ S TS+  + F
Sbjct: 442 NINNNMFGSIHNTTLSLNSTLNTFMNELNSSMTSAFGDTF 481


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 77  QSGDL*FFFLIKGTQLLFVINTHRV 151
           Q+G L  F  +K ++LL VIN H +
Sbjct: 121 QAGKLHLFDPVKTSELLHVINLHEI 145


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 223 INTLSISFTSSVNEGFNYYLTKIKE 297
           INTL++SFT + +  F + L ++++
Sbjct: 440 INTLALSFTRTRDSHFAFNLPRVRQ 464


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1076

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 240  FIHIICKRRLQLLFN*NKGKISEIKI 317
            F   I KRRL +L     GKISEI +
Sbjct: 1047 FFSPIFKRRLVVLLRALDGKISEISV 1072


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 151 NINTNYYSSLHFTQHPDLLTLYN*INTLSISFTSSVNEGFNY 276
           N+N +      F+Q+P   TLY+ I  L I    +  + F+Y
Sbjct: 530 NLNPDKLIKTIFSQNPSAYTLYDDILALDIELHKAAGD-FDY 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,483,959
Number of Sequences: 5004
Number of extensions: 27979
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)