Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16i18
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-26|CAB60359.3|  779|Caenorhabditis elegans Hypothetical...    26   7.0  
Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical pr...    26   9.3  
Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical pr...    26   9.3  
Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr...    26   9.3  
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr...    26   9.3  

>AL110485-26|CAB60359.3|  779|Caenorhabditis elegans Hypothetical
           protein Y46G5A.17 protein.
          Length = 779

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 127 FRNQHSPCNINTNYYSSLHFTQHP 198
           +  Q SP  IN+NYY      +HP
Sbjct: 242 YMRQRSPIMINSNYYGFDTLNEHP 265


>Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical
           protein F08A8.5b protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/56 (17%), Positives = 28/56 (50%)
 Frame = -1

Query: 171 IIIGVYVTR*VLITKSNCVPLIKKKNHKSPLCALSINGPI*YVFSHYIVEFHLPES 4
           I   +YV   + +  S+ +   +K ++ SP C +++N  + ++ + + ++     S
Sbjct: 17  IFANIYVIIKITLGSSHILEYFQKNSNLSPKCEINVNNLLSFIENRHFLDLEQKNS 72


>Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical
           protein F54F11.2 protein.
          Length = 1589

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 163 NYYSSLHFTQHPDLLTLYN*INTLSISFTSSVNEGFNYYLTKIKEKFL 306
           NYY ++  T+   LLT  N  NTL I+  + VN  F Y L     +FL
Sbjct: 388 NYYITMEPTKLNMLLTSLNKDNTLGITPRALVNY-FYYRLVDSLSEFL 434


>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical protein
            F43D9.1 protein.
          Length = 1226

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 161  PIIIHLFILHSTLIFLHFTIELIHYLF 241
            P++ HLF     ++ L+ T  LIHYLF
Sbjct: 989  PVVNHLF----KIVVLNATASLIHYLF 1011


>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical protein
            F43D9.1 protein.
          Length = 1226

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 161  PIIIHLFILHSTLIFLHFTIELIHYLF 241
            P++ HLF     ++ L+ T  LIHYLF
Sbjct: 989  PVVNHLF----KIVVLNATASLIHYLF 1011


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,120,106
Number of Sequences: 27780
Number of extensions: 154539
Number of successful extensions: 314
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)