Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16i17
         (366 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0272 - 23738514-23738817,23739382-23740748                       29   1.5  
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482...    28   2.0  
09_06_0070 - 20670387-20670473,20672418-20672645,20673388-206735...    27   3.4  
05_04_0064 - 17613070-17614749                                         27   6.0  
12_02_1099 - 26072301-26072468,26072642-26072751,26072966-260730...    26   7.9  
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706...    26   7.9  

>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 234 QVVDKRPRRSLDSPRLDGYVLASSPIPHTDWN-EELKLY 121
           +++ + P +S+DS  LDGY   +  +    W+ EE K Y
Sbjct: 432 EIIFENPEKSMDSVHLDGYAFFAVGMGPGKWSAEERKTY 470


>06_03_1507 -
           30646168-30646254,30646350-30646490,30648109-30648202,
           30648445-30648509,30648934-30649176,30649442-30649499,
           30649957-30650037,30650323-30650533,30650975-30651141,
           30651216-30651268,30651600-30651681,30651765-30651914,
           30652027-30652111,30652189-30652393,30652502-30652573,
           30652911-30653456
          Length = 779

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -1

Query: 279 STTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLA-----SSPIPHT 148
           S+T+ RT SS    +    KRPRR   +P  D  VLA       P PHT
Sbjct: 38  SSTLGRTRSSSSASATPNSKRPRRPPCTPESDPPVLALRAHTPDPDPHT 86


>09_06_0070 -
           20670387-20670473,20672418-20672645,20673388-20673508,
           20673604-20673702,20673802-20673833
          Length = 188

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 283 AQHNSQTDRQLASIKKPGSRQTAAPFFRFSSFGRICFGIVA 161
           A+H +  DR L  ++      TA+      S GR CF  VA
Sbjct: 99  ARHEADIDRGLLQLRASAKDATASHLQAAVSLGRACFAEVA 139


>05_04_0064 - 17613070-17614749
          Length = 559

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +2

Query: 110 WLWAYSFNSSFQSVCGMGDDAKTYPSKRGESKERRGRLSTT 232
           W W+YS+    +S+  +G  + +  S+   S      +S+T
Sbjct: 19  WRWSYSYLEKIRSMSVVGSSSSSSSSRSARSSNYSSTVSST 59


>12_02_1099 -
           26072301-26072468,26072642-26072751,26072966-26073014,
           26073081-26073495,26073604-26074019
          Length = 385

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = -1

Query: 366 EVLQCNGRYYWPDGTKFVSHVYNRSIRTHSTTVKRTDSSHRLKSQVVDKRPRRSLDSPRL 187
           + L   G+YY  D        Y    R     V++  +  R KS++ D+   R       
Sbjct: 288 QTLPKEGKYYVVDAGYLNCPGYLSPYRCTRYHVEQWKNGPRHKSKIRDREFARC--DADA 345

Query: 186 DGYVLASSPIPHTDWNEELKLYAQSH 109
           D + + +SP  H+DW+E+  L   S+
Sbjct: 346 DYFPMPTSP--HSDWSEDEPLVEDSN 369


>05_06_0206 +
           26369089-26369143,26369627-26369733,26369814-26370647,
           26370781-26370939,26371070-26371410,26373894-26373991,
           26374244-26374350,26374715-26375266,26375366-26375524,
           26375631-26376005
          Length = 928

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 262 PFDCCAVRANRSVVHMRNKLCAIGPIVSAVALQHL 366
           PF     R   S+ H+R   CA  P  S   LQ L
Sbjct: 174 PFSLLFDRGGNSIKHLRLSYCAFRPTTSLNFLQRL 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,669,003
Number of Sequences: 37544
Number of extensions: 152817
Number of successful extensions: 460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)