Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16i15
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    28   1.4  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    27   3.3  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    26   7.6  

>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 630 ASIYLKTVETEYDYIIVGSGTAGSVIAHRI 541
           AS+  +   T +  ++VG G+AG  +AH+I
Sbjct: 18  ASMLARFASTHHKVLVVGGGSAGISVAHQI 47


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 597 IPFQLFLDKLMRKYRYSKLYM*TM*LYEHTR*NMKNCTQYEKFI 728
           IP   F++ +  +  Y+KLY      YE  R ++++ T+Y++F+
Sbjct: 54  IPHGAFVEAVSVQKAYNKLYAKIANDYEFLRLHLQSITKYDEFM 97


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -3

Query: 609 VETEYDYIIVGSGTAGSV---IAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPFLHKSV 439
           +   +  ++VG  T  S+   + + IA E   TY+   A  +     ++P+L P L   +
Sbjct: 320 LRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHPQMRS--NVPLLPPTLVDQI 377

Query: 438 YDWNYE 421
           Y W  E
Sbjct: 378 YLWELE 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,546,826
Number of Sequences: 5004
Number of extensions: 78639
Number of successful extensions: 199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)